Variant report

Variant	rs551933884
Chromosome Location	chr15:82553977-82553978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:82553678-82556137	SK-N-SH	brain:	n/a	chr15:82555149-82555164 chr15:82555151-82555166
2	FOS	chr15:82553792-82554566	MCF10A-Er-Src	breast:	n/a	chr15:82553933-82553944
3	FOS	chr15:82553810-82554563	MCF10A-Er-Src	breast:	n/a	chr15:82553933-82553944
4	RCOR1	chr15:82553758-82555446	IMR90	lung:	n/a	n/a
5	POLR2A	chr15:82553756-82555369	IMR90	lung:	n/a	n/a
6	POLR2A	chr15:82553831-82554028	ProgFib	skin:	n/a	n/a
7	POLR2A	chr15:82553913-82554239	SK-N-SH	brain:	n/a	n/a
8	HCFC1	chr15:82553781-82555649	Hela-S3	cervix:	n/a	n/a
9	FOS	chr15:82553951-82554546	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr15:82553873-82554588	HUVEC	blood vessel:	n/a	chr15:82553933-82553944
11	JUN	chr15:82552495-82555445	K562	blood:	n/a	chr15:82553933-82553944 chr15:82552568-82552580 chr15:82553147-82553154 chr15:82552847-82552860 chr15:82552859-82552873 chr15:82553147-82553155 chr15:82553147-82553155

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82511968..82514595-chr15:82553137..82554662,2	K562	blood:

Variant related genes	Relation type
FAM154B	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv570246	chr15:82485707-82581264	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1041506	chr15:82496164-82581427	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1798145	chr15:82506790-82581264	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv904440	chr15:82524544-82591082	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv904441	chr15:82532963-82580736	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv904442	chr15:82540174-82571046	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
15	nsv904443	chr15:82553472-82571780	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82510800-82554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82511800-82554200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:82520000-82554200	Weak transcription	Pancreas	Pancrea
4	chr15:82520200-82554400	Weak transcription	Esophagus	oesophagus
5	chr15:82532000-82554000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr15:82533400-82554000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:82533400-82554200	Weak transcription	Colonic Mucosa	Colon
8	chr15:82533800-82554200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:82537000-82554200	Weak transcription	Ovary	ovary
10	chr15:82538200-82554400	Weak transcription	Lung	lung
11	chr15:82541000-82554400	Weak transcription	Spleen	Spleen
12	chr15:82544800-82554000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:82545600-82554000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:82545800-82554200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr15:82547000-82554400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:82551200-82554000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:82551200-82554200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:82551400-82554000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:82551400-82554000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:82551400-82554200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:82551400-82554200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:82551400-82554200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:82551400-82554200	Weak transcription	Placenta	Placenta
24	chr15:82551600-82554200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:82551600-82554200	Weak transcription	Brain Anterior Caudate	brain
26	chr15:82551600-82554200	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:82551800-82554000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:82552400-82556800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:82552600-82554200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:82552800-82554000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:82552800-82554000	Enhancers	HepG2	liver
32	chr15:82552800-82554200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr15:82552800-82554400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr15:82552800-82554400	Enhancers	Fetal Heart	heart
35	chr15:82553000-82554000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:82553000-82554000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:82553000-82554000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr15:82553000-82554000	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr15:82553000-82554200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:82553000-82554200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr15:82553000-82554200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr15:82553000-82554200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr15:82553000-82554200	Enhancers	Fetal Thymus	thymus
44	chr15:82553000-82554200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr15:82553000-82554200	Flanking Active TSS	Osteobl	bone
46	chr15:82553000-82554400	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr15:82553200-82554000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr15:82553200-82554000	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr15:82553200-82554000	Flanking Active TSS	NHDF-Ad	bronchial
50	chr15:82553200-82554000	Flanking Active TSS	NHLF	lung

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