Variant report

Variant	rs551944811
Chromosome Location	chr15:75075011-75075012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
2	chr15:75073135..75075746-chr15:75163972..75165852,2	K562	blood:
3	chr15:74927868..74930219-chr15:75074349..75076958,3	MCF-7	breast:
4	chr15:75074174..75075858-chr15:75112738..75114767,2	MCF-7	breast:
5	chr15:75073526..75075460-chr15:75228949..75230471,2	MCF-7	breast:
6	chr15:75074126..75076948-chr15:75116903..75120530,4	MCF-7	breast:
7	chr15:75073924..75075938-chr17:37855960..37858891,2	MCF-7	breast:
8	chr15:75072788..75075776-chr15:75181274..75184204,2	K562	blood:
9	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
10	chr15:75073435..75075467-chr15:75197436..75200109,2	K562	blood:
11	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
12	chr15:75073739..75076026-chr15:75228940..75231737,2	MCF-7	breast:
13	chr15:75074194..75076388-chr15:75195576..75199734,3	MCF-7	breast:
14	chr15:75072694..75075868-chr15:75228655..75230932,4	K562	blood:
15	chr15:75072740..75076753-chr15:75116483..75119304,4	MCF-7	breast:
16	chr15:75072694..75075672-chr15:75228478..75230738,4	K562	blood:
17	chr15:75074533..75077400-chr15:75247038..75249331,2	MCF-7	breast:
18	chr15:75074533..75077222-chr15:75090764..75094129,5	MCF-7	breast:
19	chr15:75072881..75075069-chr15:75249092..75251017,2	K562	blood:
20	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
21	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
22	chr15:75074806..75076876-chr15:75192504..75194161,2	K562	blood:
23	chr15:75072788..75075776-chr15:75181274..75184204,3	K562	blood:
24	chr15:74915721..74919302-chr15:75074662..75077539,3	MCF-7	breast:
25	chr15:75074461..75076806-chr15:75112062..75114585,2	K562	blood:
26	chr15:75072261..75077453-chr15:75091040..75094267,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000179151	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000141736	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000140497	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv3373735	chr15:75073424-75076272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
4	esv3407516	chr15:75073449-75075972	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75073600-75076400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:75073800-75075600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:75073800-75076200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:75073800-75076200	Active TSS	Small Intestine	intestine
5	chr15:75073800-75076600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:75074000-75075400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr15:75074000-75075400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:75074000-75075400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr15:75074000-75075600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr15:75074000-75076000	Active TSS	Primary T cells from cord blood	blood
11	chr15:75074000-75076200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:75074000-75076400	Active TSS	Fetal Kidney	kidney
13	chr15:75074000-75077000	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr15:75074200-75075200	Active TSS	H1 Cell Line	embryonic stem cell
15	chr15:75074200-75075200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:75074200-75075200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:75074200-75075200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:75074200-75075200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:75074200-75075200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:75074200-75075200	Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr15:75074200-75075200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:75074200-75075200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:75074200-75075200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:75074200-75075200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:75074200-75075200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:75074200-75075200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:75074200-75075200	Active TSS	Brain Angular Gyrus	brain
28	chr15:75074200-75075200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr15:75074200-75075200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:75074200-75075200	Active TSS	Brain Substantia Nigra	brain
31	chr15:75074200-75075200	Active TSS	Duodenum Mucosa	Duodenum
32	chr15:75074200-75075200	Active TSS	Fetal Intestine Large	intestine
33	chr15:75074200-75075200	Active TSS	Fetal Intestine Small	intestine
34	chr15:75074200-75075200	Active TSS	Fetal Lung	lung
35	chr15:75074200-75075200	Active TSS	Fetal Stomach	stomach
36	chr15:75074200-75075200	Active TSS	Lung	lung
37	chr15:75074200-75075200	Active TSS	Psoas Muscle	Psoas
38	chr15:75074200-75075200	Active TSS	Rectal Mucosa Donor 31	rectum
39	chr15:75074200-75075200	Active TSS	Rectal Smooth Muscle	rectum
40	chr15:75074200-75075200	Active TSS	HepG2	liver
41	chr15:75074200-75075200	Active TSS	HMEC	breast
42	chr15:75074200-75075200	Active TSS	K562	blood
43	chr15:75074200-75075200	Active TSS	NHEK	skin
44	chr15:75074200-75075200	Active TSS	Osteobl	bone
45	chr15:75074200-75075400	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr15:75074200-75075400	Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr15:75074200-75075400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:75074200-75075400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:75074200-75075400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:75074200-75075400	Active TSS	Primary T cells fromperipheralblood	blood

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