Variant report

Variant	rs552094684
Chromosome Location	chr3:135871676-135871677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:135870333..135872175-chr3:135909037..135911378,2	MCF-7	breast:
2	chr3:135867388..135869019-chr3:135870114..135872076,2	K562	blood:
3	chr3:135866754..135872495-chr3:135912205..135917619,11	MCF-7	breast:
4	chr3:135861871..135867047-chr3:135867816..135873226,7	K562	blood:
5	chr3:135861871..135864342-chr3:135869780..135872731,2	K562	blood:
6	chr3:135865547..135867656-chr3:135871463..135873226,2	K562	blood:
7	chr3:135871018..135872662-chr3:135874899..135876560,2	MCF-7	breast:
8	chr3:135871355..135873070-chr3:135914710..135916565,2	K562	blood:
9	chr3:135870250..135872855-chr3:135914710..135917326,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv967232	chr3:135871526-135887926	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
2	chr3:135843800-135873800	Weak transcription	Colonic Mucosa	Colon
3	chr3:135845600-135880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:135861600-135873000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:135861800-135872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:135861800-135873000	Weak transcription	Stomach Mucosa	stomach
7	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
8	chr3:135862600-135872200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:135862600-135872200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:135864200-135872200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:135864200-135882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:135864400-135882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:135864400-135885200	Weak transcription	Brain Germinal Matrix	brain
14	chr3:135865200-135871800	Strong transcription	Fetal Thymus	thymus
15	chr3:135865600-135882400	Weak transcription	Fetal Heart	heart
16	chr3:135865800-135872200	Strong transcription	Dnd41	blood
17	chr3:135866000-135872000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:135866200-135872000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr3:135866400-135871800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr3:135866800-135872000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:135867400-135872200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr3:135867400-135872400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:135867800-135872000	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:135867800-135872000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:135868000-135872000	Strong transcription	Primary B cells from cord blood	blood
26	chr3:135868400-135871800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:135868400-135871800	Strong transcription	Placenta	Placenta
28	chr3:135868400-135872800	Strong transcription	Thymus	Thymus
29	chr3:135868600-135872000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:135868800-135883000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:135869000-135871800	Strong transcription	HSMM	muscle
32	chr3:135869000-135872000	Strong transcription	Primary T cells from cord blood	blood
33	chr3:135869000-135876400	Weak transcription	HSMMtube	muscle
34	chr3:135869400-135871800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr3:135869400-135872000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:135869600-135872000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr3:135869600-135872000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr3:135869800-135872000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:135869800-135872600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr3:135869800-135882400	Weak transcription	Brain Angular Gyrus	brain
41	chr3:135870000-135871800	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr3:135870000-135872200	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:135870000-135872200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:135870000-135872200	Strong transcription	NHLF	lung
45	chr3:135870000-135874000	Weak transcription	A549	lung
46	chr3:135870200-135872000	Strong transcription	Fetal Lung	lung
47	chr3:135870200-135872000	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:135870200-135872200	Strong transcription	GM12878-XiMat	blood
49	chr3:135870400-135872000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr3:135870400-135872000	Strong transcription	Rectal Smooth Muscle	rectum

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