Variant report

Variant	rs552117637
Chromosome Location	chr6:31806036-31806037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31800755..31815108-chr6:31823340..31833266,54	K562	blood:
2	chr6:31805576..31807275-chr6:31863517..31866443,2	K562	blood:
3	chr6:31800806..31810142-chr6:31827604..31833040,24	MCF-7	breast:
4	chr6:31801616..31806746-chr6:31865132..31870777,8	MCF-7	breast:
5	chr6:31508602..31511012-chr6:31803135..31806104,3	K562	blood:
6	chr6:31630921..31635353-chr6:31802314..31807064,6	MCF-7	breast:
7	chr6:31735011..31745595-chr6:31798203..31806127,22	MCF-7	breast:
8	chr6:31761835..31764284-chr6:31804973..31807554,3	MCF-7	breast:
9	chr6:31801090..31813654-chr6:31824519..31834411,41	MCF-7	breast:
10	chr6:31804952..31806985-chr6:32013616..32015353,2	K562	blood:
11	chr6:31800867..31807275-chr6:31862460..31868132,16	K562	blood:
12	chr6:31805278..31808004-chr6:31924712..31926962,2	K562	blood:
13	chr6:31800580..31812447-chr6:31823435..31837480,47	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168477	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000204356	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000221267	Chromatin interaction
ENSG00000204435	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
14	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
15	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
16	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
17	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
18	nsv884461	chr6:31785453-31827045	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
19	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
20	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
21	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
22	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
23	nsv884463	chr6:31797422-31827045	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
24	nsv884464	chr6:31805389-31817114	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
25	nsv884465	chr6:31805389-31818580	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31802000-31807000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:31802200-31806400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:31802600-31806400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr6:31802800-31806400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
5	chr6:31802800-31807400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
6	chr6:31803000-31807400	Transcr. at gene 5' and 3'	K562	blood
7	chr6:31803000-31817200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:31803400-31806400	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
9	chr6:31803600-31806200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:31803600-31807000	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
11	chr6:31803800-31806400	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
12	chr6:31803800-31806400	Transcr. at gene 5' and 3'	Dnd41	blood
13	chr6:31803800-31806400	Transcr. at gene 5' and 3'	Osteobl	bone
14	chr6:31803800-31807200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:31803800-31807200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
16	chr6:31803800-31807200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
17	chr6:31803800-31807400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
18	chr6:31803800-31807400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:31804000-31806400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:31804000-31806400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:31804000-31806400	Transcr. at gene 5' and 3'	HSMM	muscle
22	chr6:31804000-31806400	Transcr. at gene 5' and 3'	NH-A	brain
23	chr6:31804000-31806600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
24	chr6:31804000-31806600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
25	chr6:31804000-31807000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:31804000-31807200	Transcr. at gene 5' and 3'	A549	lung
27	chr6:31804200-31806400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:31804200-31806400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:31804200-31806600	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr6:31804200-31807000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:31804200-31807000	Transcr. at gene 5' and 3'	Hela-S3	cervix
32	chr6:31804200-31807200	Transcr. at gene 5' and 3'	HMEC	breast
33	chr6:31804600-31806400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:31804600-31806600	Genic enhancers	Placenta	Placenta
35	chr6:31804600-31806600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:31804600-31807400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
37	chr6:31804800-31806200	Genic enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:31804800-31806200	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
39	chr6:31804800-31806200	Genic enhancers	Small Intestine	intestine
40	chr6:31804800-31806400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:31804800-31807000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:31804800-31807000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:31804800-31807000	Genic enhancers	Spleen	Spleen
44	chr6:31804800-31807200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:31805000-31806200	Genic enhancers	Placenta Amnion	Placenta Amnion
46	chr6:31805000-31807000	Genic enhancers	Gastric	stomach
47	chr6:31805000-31807000	Genic enhancers	Pancreas	Pancrea
48	chr6:31805000-31808600	Strong transcription	Aorta	Aorta
49	chr6:31805200-31806400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:31805200-31807400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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