Variant report

Variant	rs552197223
Chromosome Location	chr10:44789062-44789063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44788720-44789157	XLOC_008795
2	lnc-CXCL12-1	chr10:44788720-44789209	XLOC_008795
3	lnc-C10orf136-6	chr10:44788752-44789262	NONHSAT013029

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44787800-44789200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr10:44787800-44789200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:44787800-44789200	Active TSS	Brain Cingulate Gyrus	brain
4	chr10:44787800-44789200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:44787800-44789200	Bivalent Enhancer	Fetal Brain Male	brain
6	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
7	chr10:44787800-44791600	Enhancers	Ovary	ovary
8	chr10:44788000-44789200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:44788000-44789200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:44788000-44789200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr10:44788000-44789400	Enhancers	Lung	lung
12	chr10:44788200-44789200	Bivalent Enhancer	Placenta	Placenta
13	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
14	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
15	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:44788400-44789800	Enhancers	Fetal Kidney	kidney
17	chr10:44788600-44789200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:44788600-44789200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:44788600-44789200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr10:44788600-44789200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:44788600-44789200	Bivalent Enhancer	Liver	Liver
22	chr10:44788600-44789400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:44788600-44789400	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr10:44788600-44789400	Flanking Active TSS	Osteobl	bone
25	chr10:44788600-44789800	Enhancers	NHLF	lung
26	chr10:44788600-44791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:44788600-44791600	Enhancers	NHDF-Ad	bronchial
28	chr10:44788800-44789200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr10:44788800-44789200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
30	chr10:44788800-44789200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:44788800-44789200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr10:44788800-44789200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:44788800-44789200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:44788800-44789200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:44788800-44789200	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr10:44788800-44789200	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr10:44788800-44789200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
38	chr10:44788800-44789200	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr10:44788800-44789200	Bivalent Enhancer	Esophagus	oesophagus
40	chr10:44788800-44789200	Flanking Active TSS	Fetal Brain Female	brain
41	chr10:44788800-44789200	Enhancers	Gastric	stomach
42	chr10:44788800-44789200	Flanking Active TSS	Left Ventricle	heart
43	chr10:44788800-44789200	Bivalent Enhancer	Rectal Smooth Muscle	rectum
44	chr10:44788800-44789200	Flanking Active TSS	Right Atrium	heart
45	chr10:44788800-44789200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr10:44788800-44789200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr10:44788800-44789400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:44788800-44789400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:44788800-44789400	Bivalent Enhancer	Small Intestine	intestine
50	chr10:44788800-44789400	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links