Variant report

Variant	rs552268
Chromosome Location	chr12:117737793-117737794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3782204	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs505381	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs509190	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs522910	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs567910	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7295972	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs733334	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7977109	0.93[EUR][1000 genomes]
rs816297	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117697200-117746200	Weak transcription	Brain Anterior Caudate	brain
2	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:117732600-117747000	Weak transcription	NHEK	skin
4	chr12:117735000-117748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:117736800-117738800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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