Variant report

Variant	rs552482801
Chromosome Location	chr5:15942413-15942414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv3389206	chr5:15941877-15944100	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15928800-15951400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:15930200-15945600	Weak transcription	Fetal Brain Female	brain
3	chr5:15933800-15942600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:15933800-15943200	Weak transcription	Fetal Kidney	kidney
5	chr5:15934000-15943200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:15934000-15943600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:15934000-15950800	Weak transcription	Brain Substantia Nigra	brain
8	chr5:15934800-15946400	Strong transcription	Fetal Muscle Leg	muscle
9	chr5:15936200-15942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:15936800-15954600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:15937200-15942600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:15938200-15943600	Weak transcription	Lung	lung
13	chr5:15938200-15950800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:15938400-15946200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:15938400-15958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:15938600-15943200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:15938600-15943200	Weak transcription	Brain Anterior Caudate	brain
18	chr5:15939200-15946000	Weak transcription	Fetal Intestine Large	intestine
19	chr5:15939200-15949800	Weak transcription	Dnd41	blood
20	chr5:15939200-15950800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:15939200-15951000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:15939200-15951000	Weak transcription	Brain Hippocampus Middle	brain
23	chr5:15939600-15947400	Weak transcription	Fetal Lung	lung
24	chr5:15939600-15953600	Weak transcription	Ovary	ovary
25	chr5:15939600-15956400	Weak transcription	HSMM	muscle
26	chr5:15939800-15943200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:15939800-15943200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:15939800-15943400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:15940000-15943200	Weak transcription	NHDF-Ad	bronchial
30	chr5:15940000-15943200	Weak transcription	Osteobl	bone
31	chr5:15940000-15959000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:15940200-15943200	Weak transcription	NHLF	lung
33	chr5:15940200-15952400	Weak transcription	HUVEC	blood vessel
34	chr5:15941000-15946000	Strong transcription	Fetal Stomach	stomach
35	chr5:15941000-15950800	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:15941200-15943800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr5:15941400-15943600	Strong transcription	Aorta	Aorta
38	chr5:15941600-15943000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:15941600-15953600	Weak transcription	Adipose Nuclei	Adipose
40	chr5:15941800-15943400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:15942000-15943400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:15942200-15943000	Weak transcription	Right Ventricle	heart
43	chr5:15942200-15943200	Weak transcription	Fetal Heart	heart
44	chr5:15942200-15943800	Weak transcription	Left Ventricle	heart
45	chr5:15942200-15950200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:15942200-15955600	Weak transcription	HSMMtube	muscle
47	chr5:15942200-15957800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:15942400-15949000	Weak transcription	Fetal Muscle Trunk	muscle

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