Variant report

Variant	rs552540092
Chromosome Location	chr10:6017716-6017717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:

Variant related genes	Relation type
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv894811	chr10:6016399-6022562	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894812	chr10:6016892-6022562	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5980800-6017800	Weak transcription	Thymus	Thymus
2	chr10:5986200-6018600	Weak transcription	Aorta	Aorta
3	chr10:5987600-6018000	Weak transcription	Psoas Muscle	Psoas
4	chr10:5987800-6017800	Weak transcription	Fetal Thymus	thymus
5	chr10:6002400-6017800	Weak transcription	Placenta	Placenta
6	chr10:6005400-6017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:6005400-6018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:6005800-6018200	Weak transcription	Ovary	ovary
9	chr10:6007600-6018200	Weak transcription	Right Ventricle	heart
10	chr10:6008400-6017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:6010800-6017800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:6013600-6018000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:6013800-6017800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:6014000-6017800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:6014000-6017800	Weak transcription	NHEK	skin
16	chr10:6014000-6018000	Weak transcription	Fetal Intestine Large	intestine
17	chr10:6014200-6017800	Weak transcription	Esophagus	oesophagus
18	chr10:6014200-6018000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:6014200-6018200	Weak transcription	Gastric	stomach
20	chr10:6014400-6017800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:6016000-6018000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr10:6016200-6017800	Enhancers	Primary B cells from peripheral blood	blood
23	chr10:6016200-6017800	Enhancers	Lung	lung
24	chr10:6016200-6017800	Enhancers	Small Intestine	intestine
25	chr10:6016400-6018000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:6016600-6017800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:6016600-6017800	Enhancers	Adipose Nuclei	Adipose
28	chr10:6016800-6018000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:6017000-6017800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr10:6017000-6017800	Enhancers	Liver	Liver
31	chr10:6017000-6017800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:6017000-6018000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:6017000-6018000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:6017000-6018000	Flanking Active TSS	GM12878-XiMat	blood
35	chr10:6017200-6017800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:6017200-6018000	Enhancers	Brain Hippocampus Middle	brain
37	chr10:6017200-6018000	Enhancers	Pancreas	Pancrea
38	chr10:6017200-6018000	Enhancers	Hela-S3	cervix
39	chr10:6017200-6018200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr10:6017400-6017800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:6017400-6017800	Enhancers	Primary hematopoietic stem cells	blood
42	chr10:6017400-6017800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr10:6017400-6017800	Enhancers	Right Atrium	heart
44	chr10:6017400-6017800	Enhancers	NHLF	lung
45	chr10:6017400-6018000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:6017400-6018000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:6017400-6018000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:6017400-6018000	Enhancers	Fetal Intestine Small	intestine
49	chr10:6017400-6018000	Enhancers	Left Ventricle	heart
50	chr10:6017400-6018000	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links