Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:32284338..32286007-chr2:32389248..32391460,2	K562	blood:
2	chr2:32036686..32038656-chr2:32282534..32285031,2	K562	blood:
3	chr2:32277442..32284855-chr2:32286195..32291161,9	K562	blood:
4	chr2:32277338..32280133-chr2:32283297..32285674,2	K562	blood:
5	chr2:32263856..32265791-chr2:32283632..32285684,2	K562	blood:
6	chr2:32263267..32267327-chr2:32283931..32290396,13	MCF-7	breast:
7	chr2:32264100..32265746-chr2:32283485..32285341,2	K562	blood:
8	chr2:32271373..32274360-chr2:32283012..32285259,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11682335	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13403364	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs160796	1.00[CEU][hapmap]
rs191961	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2116030	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs212709	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs212719	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs212750	1.00[CEU][hapmap]
rs216537	1.00[YRI][hapmap]
rs221195	1.00[CEU][hapmap]
rs2365556	0.81[EUR][1000 genomes]
rs483796	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs486754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs490226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs502824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs533970	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs559693	1.00[AMR][1000 genomes]
rs591625	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs624859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs631826	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs648652	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6543650	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6543651	1.00[YRI][hapmap]
rs6543652	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7589874	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7593078	1.00[CEU][hapmap]
rs7600278	1.00[AMR][1000 genomes]
rs806149	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32275800-32287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:32283800-32286400	Weak transcription	HepG2	liver
3	chr2:32283800-32286400	Weak transcription	K562	blood
4	chr2:32283800-32287200	Weak transcription	A549	lung

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