Variant report

Variant	rs552724370
Chromosome Location	chr7:25902128-25902129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:25900891..25903409-chr7:25932154..25934177,2	K562	blood:
2	chr7:25896710..25899572-chr7:25900375..25902445,3	MCF-7	breast:
3	chr7:25900989..25903469-chr7:26394737..26397654,2	K562	blood:
4	chr7:25901881..25903574-chr7:26239063..26240949,2	MCF-7	breast:
5	chr7:25901871..25903514-chr7:25989852..25991943,2	K562	blood:
6	chr7:25901385..25904121-chr7:25989908..25991928,2	MCF-7	breast:
7	chr7:25901348..25903877-chr7:25904726..25907059,2	K562	blood:
8	chr7:25901765..25903846-chr7:25928862..25931823,2	K562	blood:
9	chr7:25900544..25903827-chr7:25911333..25915801,5	K562	blood:
10	chr7:25900551..25904078-chr7:26238740..26241514,6	K562	blood:
11	chr7:25900279..25902478-chr7:26238832..26241424,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv1792444	chr7:25902015-25964180	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25900000-25902800	Active TSS	NHDF-Ad	bronchial
2	chr7:25900000-25903800	Active TSS	K562	blood
3	chr7:25900400-25902600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:25900800-25902800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:25901000-25902400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
6	chr7:25901200-25902600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:25901200-25902600	Bivalent Enhancer	Fetal Heart	heart
8	chr7:25901400-25902200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:25901400-25902200	Active TSS	Colonic Mucosa	Colon
10	chr7:25901400-25902400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
11	chr7:25901400-25902600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:25901400-25902600	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr7:25901400-25902600	Bivalent/Poised TSS	GM12878-XiMat	blood
14	chr7:25901400-25902800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
15	chr7:25901400-25903000	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
16	chr7:25901400-25903000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr7:25901600-25902200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
18	chr7:25901600-25902200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
19	chr7:25901600-25902200	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr7:25901600-25902200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
21	chr7:25901600-25902600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:25901600-25902600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:25901600-25902600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
24	chr7:25901600-25902600	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr7:25901600-25902600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
26	chr7:25901600-25902600	Active TSS	A549	lung
27	chr7:25901600-25902800	Active TSS	Psoas Muscle	Psoas
28	chr7:25901600-25903000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:25901600-25903000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
30	chr7:25901800-25902200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr7:25901800-25902200	Bivalent Enhancer	Aorta	Aorta
32	chr7:25901800-25902400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
33	chr7:25901800-25902400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:25901800-25902400	Bivalent/Poised TSS	Hela-S3	cervix
35	chr7:25901800-25902400	Weak transcription	HMEC	breast
36	chr7:25901800-25902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:25901800-25902600	Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr7:25901800-25902600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
39	chr7:25901800-25902600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:25901800-25902600	Bivalent Enhancer	Placenta	Placenta
41	chr7:25901800-25902800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr7:25901800-25902800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:25901800-25902800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:25901800-25902800	Flanking Bivalent TSS/Enh	Thymus	Thymus
45	chr7:25901800-25903000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
46	chr7:25901800-25903000	Bivalent Enhancer	Fetal Stomach	stomach
47	chr7:25901800-25903000	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr7:25902000-25902200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:25902000-25902200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
50	chr7:25902000-25902200	Bivalent Enhancer	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links