Variant report

Variant	rs552810091
Chromosome Location	chr15:57999700-57999701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3415316	chr15:57999115-58000931	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57998200-57999800	Active TSS	Colon Smooth Muscle	Colon
2	chr15:57998200-57999800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:57998200-57999800	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr15:57998200-57999800	Active TSS	Rectal Smooth Muscle	rectum
5	chr15:57998200-58000000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:57998200-58000000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:57998200-58000000	Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr15:57998200-58000000	Active TSS	Brain Substantia Nigra	brain
9	chr15:57998200-58000000	Active TSS	Colonic Mucosa	Colon
10	chr15:57998200-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:57998200-58001000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:57998200-58001400	Active TSS	Fetal Kidney	kidney
13	chr15:57998400-57999800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:57998400-57999800	Active TSS	Liver	Liver
15	chr15:57998400-57999800	Active TSS	Esophagus	oesophagus
16	chr15:57998400-57999800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr15:57998400-57999800	Active TSS	Placenta	Placenta
18	chr15:57998400-58000000	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr15:57998400-58000000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:57998400-58000000	Active TSS	Fetal Stomach	stomach
21	chr15:57998400-58000200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr15:57998400-58000200	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr15:57998400-58000200	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr15:57998400-58000200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:57998400-58000200	Active TSS	Fetal Muscle Trunk	muscle
26	chr15:57998400-58000200	Active TSS	Ovary	ovary
27	chr15:57998400-58000200	Active TSS	HSMMtube	muscle
28	chr15:57998400-58000800	Active TSS	Aorta	Aorta
29	chr15:57998400-58000800	Active TSS	Right Atrium	heart
30	chr15:57998400-58000800	Active TSS	Right Ventricle	heart
31	chr15:57998600-57999800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57998600-57999800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:57998600-57999800	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr15:57998600-57999800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:57998600-57999800	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:57998600-57999800	Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr15:57998600-57999800	Active TSS	Muscle Satellite Cultured Cells	--
38	chr15:57998600-57999800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:57998600-57999800	Active TSS	Brain Anterior Caudate	brain
40	chr15:57998600-57999800	Active TSS	Brain Hippocampus Middle	brain
41	chr15:57998600-57999800	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr15:57998600-57999800	Active TSS	Fetal Lung	lung
43	chr15:57998600-57999800	Active TSS	Lung	lung
44	chr15:57998600-57999800	Active TSS	Pancreas	Pancrea
45	chr15:57998600-57999800	Active TSS	Small Intestine	intestine
46	chr15:57998600-57999800	Active TSS	Thymus	Thymus
47	chr15:57998600-57999800	Active TSS	A549	lung
48	chr15:57998600-57999800	Active TSS	HMEC	breast
49	chr15:57998600-57999800	Active TSS	HUVEC	blood vessel
50	chr15:57998600-57999800	Active TSS	NH-A	brain

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