Variant report

Variant	rs552854836
Chromosome Location	chr10:96163227-96163228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:96120934..96124258-chr10:96160439..96165957,6	MCF-7	breast:
2	chr10:96121306..96124383-chr10:96159927..96163798,5	MCF-7	breast:
3	chr10:96162891..96164490-chr10:96175616..96177129,2	MCF-7	breast:
4	chr10:96162530..96165019-chr10:96199067..96201077,2	MCF-7	breast:
5	chr10:96160448..96164371-chr10:96304138..96307716,8	MCF-7	breast:
6	chr10:96162673..96164608-chr10:96201520..96204137,3	MCF-7	breast:
7	chr10:96162017..96163519-chr15:65596803..65598979,2	MCF-7	breast:
8	chr10:96162368..96164918-chr10:96174079..96176855,3	K562	blood:
9	chr10:96162267..96164235-chr10:96185502..96188240,3	MCF-7	breast:
10	chr10:96162320..96165263-chr10:96165537..96170524,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173145	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	esv3398177	chr10:96139011-96169931	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3411992	chr10:96139011-96172041	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv3359689	chr10:96161587-96164135	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv3372349	chr10:96161987-96164835	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv14459	chr10:96162411-96163346	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv551951	chr10:96162441-96163249	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv551952	chr10:96162441-96163312	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv551953	chr10:96162493-96163249	Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	esv1801044	chr10:96162545-96170593	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv1815355	chr10:96162545-96189900	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
15	esv1817623	chr10:96162545-96189900	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96161200-96164000	Active TSS	Placenta	Placenta
2	chr10:96161600-96163800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr10:96161600-96164200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr10:96161600-96164600	Active TSS	Rectal Smooth Muscle	rectum
5	chr10:96161600-96164800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:96161600-96164800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:96161600-96164800	Active TSS	Stomach Smooth Muscle	stomach
8	chr10:96161600-96164800	Active TSS	Hela-S3	cervix
9	chr10:96161600-96165000	Active TSS	Brain Anterior Caudate	brain
10	chr10:96161600-96165000	Active TSS	Fetal Intestine Large	intestine
11	chr10:96161600-96165400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:96161800-96163400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:96161800-96163400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:96161800-96163600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr10:96161800-96163600	Active TSS	Liver	Liver
16	chr10:96161800-96163800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr10:96161800-96163800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr10:96161800-96163800	Active TSS	Esophagus	oesophagus
19	chr10:96161800-96163800	Active TSS	Fetal Kidney	kidney
20	chr10:96161800-96163800	Active TSS	Gastric	stomach
21	chr10:96161800-96164000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:96161800-96164000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
23	chr10:96161800-96164000	Active TSS	Fetal Muscle Trunk	muscle
24	chr10:96161800-96164000	Active TSS	Fetal Stomach	stomach
25	chr10:96161800-96164000	Active TSS	Left Ventricle	heart
26	chr10:96161800-96164000	Active TSS	Sigmoid Colon	Sigmoid Colon
27	chr10:96161800-96164000	Bivalent/Poised TSS	Thymus	Thymus
28	chr10:96161800-96164000	Active TSS	HUVEC	blood vessel
29	chr10:96161800-96164200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:96161800-96164200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:96161800-96164200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:96161800-96164200	Active TSS	Colon Smooth Muscle	Colon
33	chr10:96161800-96164200	Active TSS	Ovary	ovary
34	chr10:96161800-96164200	Active TSS	Psoas Muscle	Psoas
35	chr10:96161800-96164200	Active TSS	Rectal Mucosa Donor 31	rectum
36	chr10:96161800-96164400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:96161800-96164400	Active TSS	Fetal Lung	lung
38	chr10:96161800-96164600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:96161800-96164600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:96161800-96164600	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr10:96161800-96164800	Active TSS	Aorta	Aorta
42	chr10:96161800-96164800	Active TSS	Colonic Mucosa	Colon
43	chr10:96161800-96164800	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr10:96161800-96164800	Active TSS	Pancreas	Pancrea
45	chr10:96161800-96164800	Active TSS	Right Atrium	heart
46	chr10:96161800-96165000	Active TSS	Brain Hippocampus Middle	brain
47	chr10:96161800-96165000	Active TSS	HMEC	breast
48	chr10:96161800-96165200	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr10:96161800-96165200	Active TSS	Brain Cingulate Gyrus	brain
50	chr10:96161800-96165200	Active TSS	GM12878-XiMat	blood

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