Variant report

Variant	rs552893237
Chromosome Location	chr15:49535824-49535825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49535482..49538280-chr15:49538929..49540490,2	K562	blood:
2	chr15:49527930..49530105-chr15:49533812..49536591,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv569343	chr15:49531192-49547790	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv569344	chr15:49534702-49546105	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv569345	chr15:49534702-49546939	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv569346	chr15:49534702-49547790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv569347	chr15:49534702-49549943	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
2	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
3	chr15:49510000-49541800	Weak transcription	NHEK	skin
4	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:49518000-49541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
7	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
8	chr15:49518800-49539200	Weak transcription	Ovary	ovary
9	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
10	chr15:49522000-49537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:49522000-49538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:49522000-49540400	Weak transcription	Stomach Mucosa	stomach
13	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
14	chr15:49523800-49540200	Weak transcription	Spleen	Spleen
15	chr15:49524600-49539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:49524600-49544800	Weak transcription	Lung	lung
17	chr15:49528000-49537200	Weak transcription	Brain Substantia Nigra	brain
18	chr15:49528000-49539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:49528400-49547800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:49529000-49537000	Weak transcription	Brain Germinal Matrix	brain
22	chr15:49529200-49550600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:49529400-49539800	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:49529400-49540200	Weak transcription	Fetal Brain Female	brain
25	chr15:49529400-49544200	Weak transcription	Brain Anterior Caudate	brain
26	chr15:49529400-49545600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:49529600-49541600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr15:49530000-49539200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:49530600-49536600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:49530600-49537800	Strong transcription	Liver	Liver
31	chr15:49530800-49536400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr15:49530800-49538600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr15:49531000-49540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:49531000-49540600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:49531000-49542800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:49531200-49536200	Strong transcription	Primary B cells from cord blood	blood
37	chr15:49531200-49538800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:49531200-49540000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:49531400-49536000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr15:49531400-49537800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr15:49531600-49539400	Weak transcription	Psoas Muscle	Psoas
42	chr15:49531800-49539400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:49532000-49545000	Weak transcription	Fetal Thymus	thymus
44	chr15:49532200-49536800	Weak transcription	Fetal Heart	heart
45	chr15:49532200-49539200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:49532200-49539400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:49532200-49542600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:49532600-49537000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:49532800-49545400	Weak transcription	HUVEC	blood vessel
50	chr15:49533000-49541400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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