Variant report

Variant	rs552923757
Chromosome Location	chr11:8228359-8228360
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825761	chr11:8228192-8228753	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:8226200-8228400	Enhancers	Adipose Nuclei	Adipose
4	chr11:8227000-8228800	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr11:8227200-8229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:8227200-8229200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr11:8227200-8229200	Bivalent Enhancer	Placenta	Placenta
8	chr11:8227200-8229400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:8227200-8229600	Enhancers	Fetal Brain Male	brain
10	chr11:8227400-8228600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:8227400-8228800	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr11:8227400-8229000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:8227600-8228600	Active TSS	Brain Substantia Nigra	brain
14	chr11:8227600-8229000	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr11:8227600-8229000	Enhancers	Left Ventricle	heart
16	chr11:8227600-8229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:8227600-8229400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
18	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
19	chr11:8227800-8228400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:8227800-8228600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr11:8227800-8228600	Active TSS	Brain Germinal Matrix	brain
22	chr11:8227800-8228600	Active TSS	Ovary	ovary
23	chr11:8227800-8228800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
24	chr11:8227800-8228800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr11:8227800-8228800	Active TSS	Fetal Brain Female	brain
26	chr11:8227800-8228800	Enhancers	Pancreas	Pancrea
27	chr11:8227800-8229400	Enhancers	Spleen	Spleen
28	chr11:8228000-8228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:8228000-8228400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
30	chr11:8228000-8228400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr11:8228000-8228400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr11:8228000-8228400	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr11:8228000-8228400	Flanking Active TSS	Right Atrium	heart
34	chr11:8228000-8228400	Active TSS	Right Ventricle	heart
35	chr11:8228000-8228400	Active TSS	K562	blood
36	chr11:8228000-8228600	Active TSS	Brain Angular Gyrus	brain
37	chr11:8228000-8228600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:8228000-8228600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr11:8228000-8228800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr11:8228000-8228800	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr11:8228000-8228800	Flanking Active TSS	Fetal Lung	lung
42	chr11:8228000-8228800	Flanking Active TSS	HUVEC	blood vessel
43	chr11:8228000-8229200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:8228000-8229600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:8228000-8229600	Enhancers	NH-A	brain
46	chr11:8228000-8230000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr11:8228000-8230000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr11:8228200-8228400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
49	chr11:8228200-8228400	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr11:8228200-8228400	Flanking Active TSS	Brain Cingulate Gyrus	brain

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