Variant report

Variant	nsv825761
Chromosome Location	chr11:8228192-8228753
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 35 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529629791	chr11:8228197-8228198	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
2	rs546125042	chr11:8228230-8228231	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs576472679	chr11:8228247-8228248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573154552	chr11:8228260-8228261	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
5	rs530037220	chr11:8228266-8228267	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
6	rs189301857	chr11:8228291-8228292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
7	rs562163649	chr11:8228301-8228302	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs192215824	chr11:8228306-8228307	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs531073162	chr11:8228331-8228332	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs545452130	chr11:8228350-8228351	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs552923757	chr11:8228359-8228360	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
12	rs549991756	chr11:8228364-8228365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs77172746	chr11:8228367-8228368	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
14	rs547979808	chr11:8228386-8228387	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
15	rs200041098	chr11:8228387-8228388	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
16	rs373946347	chr11:8228392-8228393	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
17	rs75161037	chr11:8228393-8228394	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	lncRNA	n/a	Overlapped CNVs	n/a
18	rs576146983	chr11:8228435-8228436	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
19	rs11447084	chr11:8228459-8228460	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
20	rs550052121	chr11:8228463-8228464	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
21	rs532426002	chr11:8228479-8228480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
22	rs552419809	chr11:8228481-8228482	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
23	rs565852780	chr11:8228500-8228501	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
24	rs534570048	chr11:8228525-8228526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
25	rs547880048	chr11:8228549-8228550	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
26	rs7949087	chr11:8228552-8228553	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs149507323	chr11:8228557-8228558	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
28	rs143956063	chr11:8228559-8228560	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
29	rs76805410	chr11:8228566-8228567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
30	rs148625319	chr11:8228573-8228574	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
31	rs184424744	chr11:8228624-8228625	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
32	rs143186888	chr11:8228669-8228670	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
33	rs573459239	chr11:8228699-8228700	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
34	rs538913851	chr11:8228700-8228701	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
35	rs34745552	chr11:8228748-8228749	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Dysmorphic features	22052655	CNVD
Intellectual disability	22052655	CNVD
Obesity	22052655	CNVD
Prostate cancer	18632612	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	17440070	CNVD

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:8226200-8228400	Enhancers	Adipose Nuclei	Adipose
4	chr11:8227000-8228800	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr11:8227200-8229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:8227200-8229200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr11:8227200-8229200	Bivalent Enhancer	Placenta	Placenta
8	chr11:8227200-8229400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:8227200-8229600	Enhancers	Fetal Brain Male	brain
10	chr11:8227400-8228200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:8227400-8228600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr11:8227400-8228800	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr11:8227400-8229000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:8227600-8228200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
15	chr11:8227600-8228600	Active TSS	Brain Substantia Nigra	brain
16	chr11:8227600-8229000	Bivalent Enhancer	Fetal Intestine Small	intestine
17	chr11:8227600-8229000	Enhancers	Left Ventricle	heart
18	chr11:8227600-8229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:8227600-8229400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
21	chr11:8227800-8228200	Active TSS	Brain Anterior Caudate	brain
22	chr11:8227800-8228200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
23	chr11:8227800-8228400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:8227800-8228600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr11:8227800-8228600	Active TSS	Brain Germinal Matrix	brain
26	chr11:8227800-8228600	Active TSS	Ovary	ovary
27	chr11:8227800-8228800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
28	chr11:8227800-8228800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr11:8227800-8228800	Active TSS	Fetal Brain Female	brain
30	chr11:8227800-8228800	Enhancers	Pancreas	Pancrea
31	chr11:8227800-8229400	Enhancers	Spleen	Spleen
32	chr11:8228000-8228200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr11:8228000-8228200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr11:8228000-8228200	Active TSS	Brain Cingulate Gyrus	brain
35	chr11:8228000-8228200	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr11:8228000-8228200	Flanking Active TSS	Fetal Stomach	stomach
37	chr11:8228000-8228200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
38	chr11:8228000-8228400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:8228000-8228400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
40	chr11:8228000-8228400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr11:8228000-8228400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr11:8228000-8228400	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr11:8228000-8228400	Flanking Active TSS	Right Atrium	heart
44	chr11:8228000-8228400	Active TSS	Right Ventricle	heart
45	chr11:8228000-8228400	Active TSS	K562	blood
46	chr11:8228000-8228600	Active TSS	Brain Angular Gyrus	brain
47	chr11:8228000-8228600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr11:8228000-8228600	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr11:8228000-8228800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr11:8228000-8228800	Flanking Active TSS	Primary B cells from peripheral blood	blood

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