Variant report

Variant	rs76805410
Chromosome Location	chr11:8228566-8228567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LMO1-2	chr11:8223002-8230737	NONHSAT017846

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040979	chr11:8223090-8272605	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv825761	chr11:8228192-8228753	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8223000-8228800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:8225600-8230600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:8227000-8228800	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr11:8227200-8229000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr11:8227200-8229200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr11:8227200-8229200	Bivalent Enhancer	Placenta	Placenta
7	chr11:8227200-8229400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:8227200-8229600	Enhancers	Fetal Brain Male	brain
9	chr11:8227400-8228600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:8227400-8228800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr11:8227400-8229000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:8227600-8228600	Active TSS	Brain Substantia Nigra	brain
13	chr11:8227600-8229000	Bivalent Enhancer	Fetal Intestine Small	intestine
14	chr11:8227600-8229000	Enhancers	Left Ventricle	heart
15	chr11:8227600-8229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:8227600-8229400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr11:8227600-8229800	Enhancers	Fetal Heart	heart
18	chr11:8227800-8228600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr11:8227800-8228600	Active TSS	Brain Germinal Matrix	brain
20	chr11:8227800-8228600	Active TSS	Ovary	ovary
21	chr11:8227800-8228800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr11:8227800-8228800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
23	chr11:8227800-8228800	Active TSS	Fetal Brain Female	brain
24	chr11:8227800-8228800	Enhancers	Pancreas	Pancrea
25	chr11:8227800-8229400	Enhancers	Spleen	Spleen
26	chr11:8228000-8228600	Active TSS	Brain Angular Gyrus	brain
27	chr11:8228000-8228600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:8228000-8228600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr11:8228000-8228800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr11:8228000-8228800	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr11:8228000-8228800	Flanking Active TSS	Fetal Lung	lung
32	chr11:8228000-8228800	Flanking Active TSS	HUVEC	blood vessel
33	chr11:8228000-8229200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:8228000-8229600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:8228000-8229600	Enhancers	NH-A	brain
36	chr11:8228000-8230000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:8228000-8230000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr11:8228200-8228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:8228200-8228600	Enhancers	Fetal Stomach	stomach
40	chr11:8228200-8229000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr11:8228200-8229200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:8228400-8228600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:8228400-8228600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
44	chr11:8228400-8228600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
45	chr11:8228400-8228600	Active TSS	Brain Anterior Caudate	brain
46	chr11:8228400-8228600	Active TSS	Brain Cingulate Gyrus	brain
47	chr11:8228400-8228600	Flanking Active TSS	Right Ventricle	heart
48	chr11:8228400-8228800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:8228400-8228800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
50	chr11:8228400-8228800	Enhancers	Fetal Muscle Leg	muscle

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