Variant report

Variant	rs552952713
Chromosome Location	chr5:150942050-150942051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150908200-150948000	Strong transcription	HMEC	breast
2	chr5:150908400-150944000	Strong transcription	NHEK	skin
3	chr5:150909200-150942400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:150911600-150942800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:150918200-150945400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:150931000-150942800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:150934200-150949600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:150937000-150948600	Weak transcription	Right Atrium	heart
9	chr5:150937600-150948600	Weak transcription	Adipose Nuclei	Adipose
10	chr5:150940800-150942600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:150940800-150943200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:150941400-150942200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:150941400-150942600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:150941600-150942200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:150941800-150942200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:150941800-150942200	Genic enhancers	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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