Variant report

Variant	rs552960373
Chromosome Location	chr1:57785049-57785050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461628	chr1:57463326-57816489	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546305	chr1:57463326-57816489	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv871943	chr1:57784144-57855876	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57773200-57790200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:57776600-57790200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57780400-57787000	Weak transcription	Fetal Brain Male	brain
4	chr1:57784000-57785400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr1:57784600-57785200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:57784600-57785200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:57784600-57785200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:57784600-57785200	Enhancers	Fetal Muscle Leg	muscle
9	chr1:57784600-57785400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:57784600-57785400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:57784600-57785400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:57784600-57785400	Enhancers	Fetal Brain Female	brain
13	chr1:57784600-57785600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:57784600-57785600	Enhancers	Hela-S3	cervix
15	chr1:57784600-57785800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:57784600-57785800	Enhancers	Fetal Lung	lung
17	chr1:57784600-57786000	Enhancers	Duodenum Mucosa	Duodenum
18	chr1:57784800-57785200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:57784800-57785200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:57784800-57785200	Enhancers	HMEC	breast
21	chr1:57784800-57785400	Enhancers	NHEK	skin
22	chr1:57784800-57785600	Weak transcription	Brain Angular Gyrus	brain
23	chr1:57784800-57785600	Enhancers	Fetal Stomach	stomach
24	chr1:57784800-57786000	Enhancers	Fetal Intestine Large	intestine
25	chr1:57784800-57786000	Enhancers	Fetal Intestine Small	intestine
26	chr1:57785000-57785400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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