Variant report

Variant	rs553039741
Chromosome Location	chr7:66120308-66120309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:66116638..66119241-chr7:66120094..66122874,2	K562	blood:
2	chr7:66119683..66120356-chr7:66146838..66147583,2	Hela-S3	cervix:
3	chr7:66119236..66121485-chr7:66204940..66206778,2	K562	blood:
4	chr7:66119490..66121348-chr7:66145844..66148158,2	K562	blood:
5	chr7:66055738..66058439-chr7:66119494..66121209,2	MCF-7	breast:
6	chr7:66052648..66055044-chr7:66119940..66122450,2	K562	blood:
7	chr7:66118152..66121117-chr7:66145225..66147766,4	MCF-7	breast:
8	chr7:66055924..66057616-chr7:66118024..66120875,2	K562	blood:
9	chr7:66118570..66121104-chr7:66386256..66388029,2	K562	blood:
10	chr7:66055703..66058887-chr7:66117840..66121190,6	MCF-7	breast:
11	chr7:66091844..66094640-chr7:66118336..66122170,5	MCF-7	breast:
12	chr7:66119671..66121376-chr7:66145999..66148457,2	MCF-7	breast:
13	chr7:66091898..66097382-chr7:66117985..66122507,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106609	Chromatin interaction
ENSG00000272831	Chromatin interaction
ENSG00000232559	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000154710	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv2761151	chr7:66095738-66138285	Flanking Active TSS Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3496297	chr7:66099491-66136579	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3496298	chr7:66099491-66136579	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3486481	chr7:66101377-66137773	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv3486482	chr7:66101377-66137773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv3509629	chr7:66101713-66137585	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3509631	chr7:66101713-66137585	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv967445	chr7:66112743-66133589	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv3441217	chr7:66118067-66120865	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv970517	chr7:66120041-66121468	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66118000-66121000	Active TSS	H1 Cell Line	embryonic stem cell
2	chr7:66118200-66120800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:66118200-66120800	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr7:66118200-66120800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:66118200-66120800	Active TSS	Fetal Intestine Large	intestine
6	chr7:66118200-66121000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:66118200-66121000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr7:66118200-66121200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:66118200-66121200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:66118200-66121200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:66118200-66121200	Active TSS	NHDF-Ad	bronchial
12	chr7:66118400-66120400	Active TSS	Small Intestine	intestine
13	chr7:66118400-66120600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:66118400-66120600	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr7:66118400-66120800	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:66118400-66120800	Active TSS	Right Atrium	heart
17	chr7:66118400-66120800	Active TSS	GM12878-XiMat	blood
18	chr7:66118400-66120800	Active TSS	HMEC	breast
19	chr7:66118400-66121000	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr7:66118400-66121000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr7:66118400-66121000	Active TSS	Brain Cingulate Gyrus	brain
22	chr7:66118400-66121000	Active TSS	Osteobl	bone
23	chr7:66118400-66121200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:66118400-66121400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:66118600-66120400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:66118600-66120400	Active TSS	HUVEC	blood vessel
27	chr7:66118600-66120600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:66118600-66120600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:66118600-66120600	Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr7:66118600-66120600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:66118600-66120600	Active TSS	Liver	Liver
32	chr7:66118600-66120600	Active TSS	Brain Angular Gyrus	brain
33	chr7:66118600-66120600	Active TSS	Brain Substantia Nigra	brain
34	chr7:66118600-66120600	Active TSS	Colonic Mucosa	Colon
35	chr7:66118600-66120600	Active TSS	Duodenum Mucosa	Duodenum
36	chr7:66118600-66120600	Active TSS	Esophagus	oesophagus
37	chr7:66118600-66120600	Active TSS	Fetal Kidney	kidney
38	chr7:66118600-66120600	Active TSS	Psoas Muscle	Psoas
39	chr7:66118600-66120600	Active TSS	Stomach Mucosa	stomach
40	chr7:66118600-66120600	Active TSS	NH-A	brain
41	chr7:66118600-66120800	Active TSS	Brain Anterior Caudate	brain
42	chr7:66118600-66120800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr7:66118600-66120800	Active TSS	Fetal Brain Female	brain
44	chr7:66118600-66120800	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr7:66118600-66120800	Active TSS	Hela-S3	cervix
46	chr7:66118600-66120800	Active TSS	K562	blood
47	chr7:66118600-66120800	Active TSS	NHEK	skin
48	chr7:66118600-66121000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr7:66118600-66121000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:66118600-66121000	Active TSS	Brain Hippocampus Middle	brain

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