Variant report

Variant	rs553261799
Chromosome Location	chr17:45130992-45130993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GOSR2-2	chr17:45126422-45131777	NONHSAT054246
2	lnc-RPRML-3	chr17:45129892-45131988	NONHSAT054259

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3492820	chr17:44174959-45161556	Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3492821	chr17:44174959-45161556	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	esv3502492	chr17:44305975-45169159	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv3502493	chr17:44305975-45169159	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv833466	chr17:45020360-45204537	Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv522797	chr17:45084279-45183152	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv1849526	chr17:45087601-45132750	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv9565	chr17:45088304-45135259	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv962331	chr17:45088443-45141744	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
12	esv1843358	chr17:45090768-45141959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	esv16081	chr17:45091145-45133206	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
14	esv1851648	chr17:45091619-45146146	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
15	esv1846431	chr17:45092987-45145946	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
16	esv1843137	chr17:45099247-45132750	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv820424	chr17:45114979-45135615	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv19725	chr17:45115875-45135615	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv3332795	chr17:45116212-45209297	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
20	esv3386521	chr17:45116232-45209267	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
21	esv16013	chr17:45125753-45134686	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv21010	chr17:45125753-45177221	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	esv1826142	chr17:45126113-45131712	Strong transcription Weak transcription Enhancers Genic enhancers	lncRNA	2 gene(s)	inside rSNPs	diseases
24	esv16289	chr17:45129809-45132651	Weak transcription Enhancers Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
25	nsv1059766	chr17:45130765-45203468	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45090000-45131600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:45090200-45131000	Weak transcription	Dnd41	blood
3	chr17:45096200-45131000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:45121400-45142200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:45123800-45143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:45124000-45131400	Weak transcription	GM12878-XiMat	blood
7	chr17:45125000-45133400	Weak transcription	Fetal Brain Female	brain
8	chr17:45125200-45132400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:45125200-45143600	Weak transcription	HepG2	liver
10	chr17:45125400-45132400	Weak transcription	Right Ventricle	heart
11	chr17:45125400-45133200	Weak transcription	Gastric	stomach
12	chr17:45125400-45133400	Weak transcription	Pancreas	Pancrea
13	chr17:45125400-45143800	Weak transcription	NHLF	lung
14	chr17:45127000-45133400	Weak transcription	Ovary	ovary
15	chr17:45127200-45131400	Weak transcription	HSMM	muscle
16	chr17:45128200-45133200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:45128200-45133400	Weak transcription	Brain Angular Gyrus	brain
18	chr17:45128200-45140000	Weak transcription	K562	blood
19	chr17:45128200-45143600	Weak transcription	HSMMtube	muscle
20	chr17:45128200-45143800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr17:45128400-45131000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr17:45128400-45131200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr17:45128400-45131400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr17:45128400-45133200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr17:45128600-45134200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:45128800-45133400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr17:45128800-45143600	Weak transcription	HUVEC	blood vessel
28	chr17:45128800-45144600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:45129000-45131400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr17:45129000-45131600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr17:45129000-45131600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:45129000-45133600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:45129200-45131600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr17:45129200-45132400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:45129200-45133000	Weak transcription	Esophagus	oesophagus
36	chr17:45129200-45137200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:45129400-45131000	Weak transcription	Colonic Mucosa	Colon
38	chr17:45129400-45131000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr17:45129400-45144200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr17:45129600-45131000	Strong transcription	Brain Hippocampus Middle	brain
41	chr17:45129600-45131800	Strong transcription	Osteobl	bone
42	chr17:45129600-45132000	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr17:45129600-45132000	Strong transcription	Spleen	Spleen
44	chr17:45129600-45133800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr17:45129600-45134000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:45129600-45134000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr17:45129600-45134000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr17:45129600-45134000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr17:45129600-45134000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr17:45129600-45134000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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