Variant report

Variant	rs553341976
Chromosome Location	chr9:104300791-104300792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104296600-104301800	Weak transcription	Spleen	Spleen
2	chr9:104296800-104302600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:104296800-104302600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:104296800-104302600	Weak transcription	Lung	lung
5	chr9:104296800-104302800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:104296800-104302800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:104296800-104305800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:104296800-104334200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:104296800-104337400	Weak transcription	Stomach Mucosa	stomach
10	chr9:104297000-104302000	Weak transcription	Fetal Stomach	stomach
11	chr9:104297000-104302600	Weak transcription	Colonic Mucosa	Colon
12	chr9:104297000-104302600	Weak transcription	NH-A	brain
13	chr9:104297000-104302800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:104297000-104302800	Weak transcription	HSMMtube	muscle
15	chr9:104297000-104309200	Weak transcription	HUVEC	blood vessel
16	chr9:104297000-104317600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr9:104297200-104302400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:104297200-104302600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:104297200-104302800	Weak transcription	Fetal Intestine Small	intestine
20	chr9:104297200-104309200	Weak transcription	K562	blood
21	chr9:104297400-104301400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:104297600-104300800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
23	chr9:104297600-104300800	Strong transcription	Osteobl	bone
24	chr9:104297600-104301000	Genic enhancers	Brain Cingulate Gyrus	brain
25	chr9:104297600-104301000	Strong transcription	Fetal Muscle Trunk	muscle
26	chr9:104297600-104302800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr9:104297600-104304600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:104297600-104306000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:104297600-104321200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:104297600-104330400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:104297600-104330400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr9:104297800-104300800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:104297800-104300800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:104297800-104300800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr9:104297800-104300800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr9:104297800-104300800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:104297800-104303800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:104297800-104303800	Strong transcription	Fetal Muscle Leg	muscle
39	chr9:104297800-104304800	Strong transcription	Fetal Lung	lung
40	chr9:104297800-104305800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr9:104297800-104311400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:104297800-104317400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:104297800-104318400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:104297800-104320400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:104297800-104320400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:104297800-104325400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr9:104297800-104332600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:104297800-104333000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr9:104298000-104301000	Strong transcription	Placenta	Placenta
50	chr9:104298000-104304200	Strong transcription	Fetal Thymus	thymus

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