Variant report

Variant	rs553396
Chromosome Location	chr1:93482893-93482894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93331676..93334164-chr1:93480401..93483353,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11164860	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164861	0.83[ASN][1000 genomes]
rs12022729	0.84[ASN][1000 genomes]
rs12023767	0.84[ASN][1000 genomes]
rs12027025	0.84[ASN][1000 genomes]
rs12039256	0.84[ASN][1000 genomes]
rs12043577	0.84[ASN][1000 genomes]
rs12119421	0.83[ASN][1000 genomes]
rs12130551	0.83[ASN][1000 genomes]
rs12134501	0.84[ASN][1000 genomes]
rs12141895	0.84[ASN][1000 genomes]
rs1678778	0.88[ASN][1000 genomes]
rs2086312	0.83[ASN][1000 genomes]
rs2253595	0.85[ASN][1000 genomes]
rs2492898	0.83[ASN][1000 genomes]
rs2928183	0.84[ASN][1000 genomes]
rs4626900	0.84[ASN][1000 genomes]
rs481214	0.80[EUR][1000 genomes]
rs4847227	0.89[ASN][1000 genomes]
rs485336	0.84[ASN][1000 genomes]
rs486370	0.84[ASN][1000 genomes]
rs492054	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs492754	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs496465	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs497540	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs504418	0.88[ASN][1000 genomes]
rs517856	0.82[ASN][1000 genomes]
rs521527	0.88[ASN][1000 genomes]
rs524045	0.85[ASN][1000 genomes]
rs557812	0.87[ASN][1000 genomes]
rs56320266	0.82[ASN][1000 genomes]
rs572131	0.84[ASN][1000 genomes]
rs57478994	0.85[ASN][1000 genomes]
rs590296	0.88[ASN][1000 genomes]
rs591820	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs591868	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs592751	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs664524	0.92[ASN][1000 genomes]
rs664852	0.87[ASN][1000 genomes]
rs6674738	0.82[ASN][1000 genomes]
rs680285	0.85[ASN][1000 genomes]
rs808833	0.83[ASN][1000 genomes]
rs9787147	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93474200-93490600	Weak transcription	K562	blood
2	chr1:93480400-93491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:93482200-93487400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:93482400-93487000	Weak transcription	Liver	Liver
5	chr1:93482600-93487400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links