Variant report

Variant	rs9787147
Chromosome Location	chr1:93491275-93491276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr1:93491138-93491494	K562	blood:	n/a	n/a
2	BACH1	chr1:93491254-93491449	K562	blood:	n/a	n/a
3	MAZ	chr1:93491178-93491438	K562	blood:	n/a	n/a
4	EP300	chr1:93491030-93491529	K562	blood:	n/a	n/a
5	MYC	chr1:93491158-93491484	K562	blood:	n/a	n/a
6	JUN	chr1:93490459-93491684	K562	blood:	n/a	n/a
7	SPI1	chr1:93491228-93491472	K562	blood:	n/a	n/a
8	ATF1	chr1:93491196-93491529	K562	blood:	n/a	n/a
9	RCOR1	chr1:93491116-93491503	K562	blood:	n/a	n/a
10	ARID3A	chr1:93491188-93491454	K562	blood:	n/a	n/a
11	IRF1	chr1:93491173-93491453	K562	blood:	n/a	n/a
12	CUX1	chr1:93491144-93491484	K562	blood:	n/a	n/a
13	TBL1XR1	chr1:93491142-93491577	K562	blood:	n/a	n/a
14	RCOR1	chr1:93491149-93491448	K562	blood:	n/a	n/a
15	ZMIZ1	chr1:93491229-93491399	K562	blood:	n/a	n/a
16	MYC	chr1:93491204-93491529	K562	blood:	n/a	n/a
17	JUND	chr1:93491053-93491566	K562	blood:	n/a	n/a
18	BHLHE40	chr1:93491068-93491491	K562	blood:	n/a	n/a
19	MAFK	chr1:93491136-93491491	K562	blood:	n/a	n/a
20	TEAD4	chr1:93491028-93491558	K562	blood:	n/a	n/a
21	ZC3H11A	chr1:93491268-93491379	K562	blood:	n/a	n/a
22	TAL1	chr1:93491249-93491425	K562	blood:	n/a	n/a
23	CEBPB	chr1:93491250-93491450	K562	blood:	n/a	n/a
24	MAX	chr1:93491099-93491482	K562	blood:	n/a	n/a
25	ZNF143	chr1:93491182-93491371	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93485980..93488495-chr1:93489742..93491453,2	K562	blood:

No data

Variant related genes	Relation type
RN7SKP123	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11164860	0.84[ASN][1000 genomes]
rs11164861	0.89[ASN][1000 genomes]
rs12022729	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12023767	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12027025	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12039256	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12043007	0.81[CHB][hapmap]
rs12043577	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12119421	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12130551	0.89[ASN][1000 genomes]
rs12134501	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12141895	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1678778	0.95[ASN][1000 genomes]
rs2086312	0.87[ASN][1000 genomes]
rs2253595	0.91[ASN][1000 genomes]
rs2492898	0.99[ASN][1000 genomes]
rs2815417	0.89[JPT][hapmap]
rs2928183	0.88[ASN][1000 genomes]
rs4626900	0.99[ASN][1000 genomes]
rs4847227	0.96[ASN][1000 genomes]
rs485336	0.99[ASN][1000 genomes]
rs486370	0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs492054	0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs492754	0.82[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs493980	0.83[JPT][hapmap]
rs496465	0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs497540	0.90[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs504418	0.95[ASN][1000 genomes]
rs517856	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs521527	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs524045	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536837	0.83[ASN][1000 genomes]
rs544051	0.81[ASN][1000 genomes]
rs544285	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs553396	0.85[ASN][1000 genomes]
rs557812	0.93[ASN][1000 genomes]
rs56320266	0.88[ASN][1000 genomes]
rs572131	0.90[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs57478994	1.00[ASN][1000 genomes]
rs590296	0.95[ASN][1000 genomes]
rs591820	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs591868	0.85[ASN][1000 genomes]
rs592751	0.84[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs638462	0.82[ASN][1000 genomes]
rs638958	0.81[ASN][1000 genomes]
rs664524	0.93[ASN][1000 genomes]
rs664852	0.94[ASN][1000 genomes]
rs6674738	0.84[ASN][1000 genomes]
rs680285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs808833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9787147	FAM69A	cis	Thyroid	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93486800-93494000	Enhancers	Dnd41	blood
2	chr1:93488000-93504200	Enhancers	Fetal Thymus	thymus
3	chr1:93490600-93491400	Enhancers	Thymus	Thymus
4	chr1:93490600-93492000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:93490600-93492000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:93490800-93491600	Enhancers	Primary hematopoietic stem cells	blood
7	chr1:93490800-93492000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:93491000-93491400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:93491200-93491400	Enhancers	K562	blood
10	chr1:93491200-93492000	Enhancers	Primary neutrophils fromperipheralblood	blood

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