Variant report

Variant	rs553401647
Chromosome Location	chr15:42024423-42024424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42024047..42026644-chr15:42028448..42031222,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	esv988006	chr15:42016301-42026157	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1044347	chr15:42023805-42049360	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41984200-42034800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41989000-42041600	Weak transcription	Fetal Brain Male	brain
4	chr15:41996200-42034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42002200-42028400	Weak transcription	Pancreas	Pancrea
6	chr15:42003600-42026800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:42003600-42027000	Weak transcription	Brain Germinal Matrix	brain
8	chr15:42003600-42028400	Weak transcription	Aorta	Aorta
9	chr15:42003800-42027200	Weak transcription	Spleen	Spleen
10	chr15:42003800-42028400	Weak transcription	Gastric	stomach
11	chr15:42003800-42028400	Weak transcription	Small Intestine	intestine
12	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
13	chr15:42004000-42026800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:42004000-42027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:42004600-42026600	Weak transcription	Right Ventricle	heart
16	chr15:42005400-42027000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:42005400-42028400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:42005600-42027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:42005600-42027400	Weak transcription	NHDF-Ad	bronchial
20	chr15:42005800-42027000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:42005800-42028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:42006000-42026200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:42006000-42028400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:42006200-42025000	Weak transcription	HepG2	liver
25	chr15:42006200-42026600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr15:42006200-42027200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:42006200-42027200	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:42006200-42034800	Weak transcription	A549	lung
29	chr15:42006400-42025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:42006400-42026600	Weak transcription	HMEC	breast
31	chr15:42006400-42041400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:42006600-42025600	Weak transcription	Dnd41	blood
33	chr15:42006600-42027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:42006800-42025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:42006800-42026000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:42006800-42026400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:42006800-42027400	Weak transcription	NHEK	skin
38	chr15:42008400-42024600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:42009800-42056800	Weak transcription	Fetal Heart	heart
40	chr15:42011200-42026400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:42011400-42025400	Weak transcription	Brain Substantia Nigra	brain
42	chr15:42016000-42028400	Weak transcription	Psoas Muscle	Psoas
43	chr15:42017400-42062600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:42019000-42037000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:42019200-42037200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:42019400-42032800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:42019400-42036800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:42019400-42037000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:42019400-42060600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:42019600-42026000	Weak transcription	HSMMtube	muscle

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