Variant report

Variant	rs553407
Chromosome Location	chr11:63165460-63165461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs35375575	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs493232	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs525319	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs544255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56380757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564090	0.89[AFR][1000 genomes]
rs567641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs573857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57478357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57658167	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59235496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs610729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614628	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs616365	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs619911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs666353	0.89[AFR][1000 genomes]
rs679892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63162800-63166200	Strong transcription	Liver	Liver
2	chr11:63165200-63171400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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