Variant report

Variant	rs35375575
Chromosome Location	chr11:63231042-63231043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63228858..63231048-chr11:63233595..63235701,2	K562	blood:
2	chr11:63213892..63215985-chr11:63230796..63232451,2	MCF-7	breast:
3	chr11:63226050..63231837-chr11:63232344..63235884,6	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2957251	1.00[AMR][1000 genomes]
rs493232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502017	1.00[AMR][1000 genomes]
rs525319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs528770	1.00[AMR][1000 genomes]
rs532501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs538627	1.00[AMR][1000 genomes]
rs544255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs553407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs554661	1.00[AMR][1000 genomes]
rs56380757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs564090	0.81[AFR][1000 genomes]
rs567641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs573083	1.00[AMR][1000 genomes]
rs573857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57478357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57658167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59235496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs610729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs614628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs616365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs619911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs666353	0.81[AFR][1000 genomes]
rs679892	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63231800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:63227800-63231400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:63227800-63233800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:63228000-63234200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:63228200-63235400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:63228400-63238000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:63228800-63234800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:63229000-63233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:63229000-63236000	Strong transcription	Adipose Nuclei	Adipose
13	chr11:63229400-63234200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr11:63229600-63233600	Weak transcription	Brain Substantia Nigra	brain
15	chr11:63229800-63232600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:63230000-63231200	Strong transcription	Colon Smooth Muscle	Colon
17	chr11:63230400-63232400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:63230600-63232000	Strong transcription	Stomach Smooth Muscle	stomach
19	chr11:63230800-63232400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr11:63231000-63231600	Strong transcription	Pancreas	Pancrea
21	chr11:63231000-63235200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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