Variant report

Variant	rs528770
Chromosome Location	chr11:63447040-63447041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63437832..63440403-chr11:63444142..63447314,3	MCF-7	breast:
2	chr11:63442659..63445643-chr11:63445917..63448695,3	MCF-7	breast:
3	chr11:63437875..63444495-chr11:63445155..63450267,13	K562	blood:
4	chr11:63436138..63441406-chr11:63446930..63451361,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1199383	1.00[AMR][1000 genomes]
rs1301131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2510524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2957255	1.00[AMR][1000 genomes]
rs2957256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2959888	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35375575	1.00[AMR][1000 genomes]
rs480271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs489580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs496346	1.00[AFR][1000 genomes]
rs496354	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501095	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs502717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512073	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516981	1.00[AMR][1000 genomes]
rs518304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs518453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs519374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs520640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs533130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs538627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs540034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs554661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs560610	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56380757	1.00[AMR][1000 genomes]
rs569657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs573083	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57478357	1.00[AMR][1000 genomes]
rs57658167	1.00[AMR][1000 genomes]
rs59235496	1.00[AMR][1000 genomes]
rs622400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs653841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs694024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63439200-63448400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:63439200-63448400	Weak transcription	Aorta	Aorta
3	chr11:63439600-63448200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:63439600-63448200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:63439600-63448400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:63439600-63448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63439600-63448400	Weak transcription	Liver	Liver
8	chr11:63439600-63448400	Weak transcription	Right Ventricle	heart
9	chr11:63439800-63448000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:63439800-63448000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:63439800-63448200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:63441000-63448200	Weak transcription	A549	lung
13	chr11:63441200-63448000	Weak transcription	K562	blood
14	chr11:63441400-63447200	Weak transcription	NHLF	lung
15	chr11:63441400-63447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:63441400-63447800	Weak transcription	HMEC	breast
17	chr11:63441400-63448200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:63441400-63448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:63441600-63448200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:63441600-63448200	Weak transcription	NH-A	brain
21	chr11:63441800-63447200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:63442000-63447200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:63445400-63447200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:63445800-63448000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:63446000-63447200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:63446400-63448400	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr11:63446600-63448200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:63446800-63447200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:63446800-63447600	Enhancers	HSMM	muscle
30	chr11:63446800-63448200	Enhancers	Hela-S3	cervix
31	chr11:63447000-63447600	Enhancers	HSMMtube	muscle
32	chr11:63447000-63448200	Enhancers	Fetal Heart	heart

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