Variant report

Variant	rs553480650
Chromosome Location	chr9:24293018-24293019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378420	chr9:24010617-24371943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1030724	chr9:24096911-24334841	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv540095	chr9:24096911-24334841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1033331	chr9:24111020-24349562	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv540096	chr9:24111020-24349562	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1022552	chr9:24111220-24349423	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
7	nsv540097	chr9:24111220-24349423	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
8	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv831528	chr9:24167266-24350892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv892795	chr9:24170867-24488294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
11	nsv466303	chr9:24205004-24335841	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	nsv613849	chr9:24205004-24335841	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
13	esv2761509	chr9:24283658-24333912	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
14	nsv1021134	chr9:24285430-24342623	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24292400-24293600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr9:24292400-24294800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:24292600-24293400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr9:24292600-24295000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:24292800-24293800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:24292800-24295000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:24293000-24293200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:24293000-24293400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:24293000-24293600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:24293000-24293800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr9:24293000-24294000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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