Variant report

Variant	rs553515046
Chromosome Location	chr10:38739353-38739354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:38739168-38739414	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000203496	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv947860	chr10:38678275-38747483	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv895035	chr10:38678941-38739427	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv895036	chr10:38678941-38741100	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv895037	chr10:38678941-38741777	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv540569	chr10:38689167-38769822	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv16395	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv821215	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv540571	chr10:38696654-38743406	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
18	nsv540572	chr10:38696654-38769822	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv895039	chr10:38700234-38739557	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv895040	chr10:38700234-38741100	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv895041	chr10:38700234-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv550420	chr10:38700234-38768341	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv895042	chr10:38700234-38775205	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv895043	chr10:38700234-38790428	Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv948261	chr10:38720728-38744526	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv895044	chr10:38725007-38741100	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
29	nsv895045	chr10:38725007-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
30	esv2762857	chr10:38733507-39076221	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
31	esv19338	chr10:38737759-38740414	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
32	esv1007625	chr10:38737794-38740264	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
33	esv1816986	chr10:38738541-38739747	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
34	esv1830457	chr10:38738541-38743545	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
35	esv1833647	chr10:38738541-38743545	ZNF genes & repeats Strong transcription Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv1839987	chr10:38738541-38743545	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
37	esv1839612	chr10:38738541-38758114	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
38	esv1840702	chr10:38738847-38741100	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
39	nsv550421	chr10:38739270-38739747	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38692200-38741000	Weak transcription	Aorta	Aorta
2	chr10:38692400-38739600	Weak transcription	Gastric	stomach
3	chr10:38692800-38741200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:38700200-38739600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:38711200-38739600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:38723400-38739400	Weak transcription	Brain Angular Gyrus	brain
7	chr10:38724800-38739600	Weak transcription	Fetal Lung	lung
8	chr10:38726400-38739400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:38727800-38740600	Weak transcription	Psoas Muscle	Psoas
10	chr10:38733400-38739600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:38734400-38740000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:38735400-38739600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:38736800-38740600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:38737000-38739400	Weak transcription	NHLF	lung
15	chr10:38737200-38739800	Strong transcription	Brain Hippocampus Middle	brain
16	chr10:38737200-38739800	ZNF genes & repeats	Fetal Stomach	stomach
17	chr10:38737200-38740400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:38737800-38739400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:38737800-38739600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
20	chr10:38738000-38739600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:38738000-38739600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:38738000-38739600	Weak transcription	Placenta	Placenta
23	chr10:38738200-38739800	Weak transcription	Primary T cells from cord blood	blood
24	chr10:38738200-38739800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:38738200-38739800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:38738400-38739400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:38738400-38739400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:38738400-38739400	Weak transcription	Spleen	Spleen
29	chr10:38738400-38739600	Weak transcription	Fetal Intestine Small	intestine
30	chr10:38738400-38739600	Weak transcription	Ovary	ovary
31	chr10:38738400-38740000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:38738400-38740000	Weak transcription	Liver	Liver
33	chr10:38738400-38740000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:38738400-38740000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:38738400-38740000	Weak transcription	Right Ventricle	heart
36	chr10:38738400-38741200	Weak transcription	Brain Anterior Caudate	brain
37	chr10:38738400-38742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:38738600-38740600	Weak transcription	Pancreas	Pancrea
39	chr10:38738800-38740400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:38738800-38740400	Weak transcription	Thymus	Thymus
41	chr10:38738800-38741200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:38739000-38739400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:38739000-38739400	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links