Variant report
| Variant | rs553528038 |
|---|---|
| Chromosome Location | chr3:86171323-86171324 |
| allele | -/GT |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr3:86171266-86171426 | HepG2 | liver: | n/a | chr3:86171330-86171341 chr3:86171330-86171341 chr3:86171329-86171343 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201410 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3370260 | chr3:86169162-86173460 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 3 | esv2267421 | chr3:86171322-86171324 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv1155075 | chr3:86171322-86171324 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv222165 | chr3:86171323-86171324 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
