Variant report

Variant	esv3370260
Chromosome Location	chr3:86169162-86173460
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FAM48A	chr3:86172374-86172403	GM12878	blood:	n/a	n/a
2	MAFK	chr3:86171266-86171426	HepG2	liver:	n/a	chr3:86171330-86171341 chr3:86171330-86171341 chr3:86171329-86171343
3	MYC	chr3:86169537-86169658	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000201410	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546502857	chr3:86169547-86169548	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs140190952	chr3:86169551-86169552	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs73138178	chr3:86169587-86169588	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs137889009	chr3:86169609-86169610	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs555589468	chr3:86169616-86169617	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs576981998	chr3:86171266-86171267	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs544380464	chr3:86171269-86171270	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs4688880	chr3:86171292-86171293	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs530014654	chr3:86171298-86171299	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs67527889	chr3:86171322-86171323	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs553528038	chr3:86171323-86171324	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs370013536	chr3:86171387-86171388	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs192858990	chr3:86171424-86171425	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs555869206	chr3:86172395-86172396	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs549428551	chr3:86172396-86172397	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs574699491	chr3:86172401-86172402	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs535629622	chr3:86172403-86172404	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs202024412	chr3:86173408-86173409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs201190295	chr3:86173458-86173459	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Prostate cancer	21307934	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86173400-86174600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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