Variant report
| Variant | rs73138178 |
|---|---|
| Chromosome Location | chr3:86169587-86169588 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MYC | chr3:86169537-86169658 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201410 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs67344309 | 0.91[EUR][1000 genomes] |
| rs73132559 | 0.81[EUR][1000 genomes] |
| rs73132562 | 0.81[EUR][1000 genomes] |
| rs73134138 | 0.83[AMR][1000 genomes] |
| rs73134140 | 0.83[AMR][1000 genomes] |
| rs73134148 | 1.00[AMR][1000 genomes] |
| rs73134155 | 0.83[AMR][1000 genomes] |
| rs73134159 | 0.83[AMR][1000 genomes] |
| rs73134162 | 1.00[AMR][1000 genomes] |
| rs73134176 | 1.00[AMR][1000 genomes] |
| rs73134181 | 1.00[AMR][1000 genomes] |
| rs73134182 | 1.00[AMR][1000 genomes] |
| rs73134184 | 1.00[AMR][1000 genomes] |
| rs73136126 | 1.00[AMR][1000 genomes] |
| rs73136141 | 1.00[AMR][1000 genomes] |
| rs73136146 | 1.00[AMR][1000 genomes] |
| rs73136158 | 1.00[AMR][1000 genomes] |
| rs73138180 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73138198 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3370260 | chr3:86169162-86173460 | Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
