Variant report
| Variant | rs73134148 |
|---|---|
| Chromosome Location | chr3:86038054-86038055 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11927233 | 1.00[EUR][1000 genomes] |
| rs73132617 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73132625 | 0.83[AMR][1000 genomes] |
| rs73134138 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134140 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134155 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134159 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134162 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134176 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134181 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134182 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134184 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73134192 | 1.00[EUR][1000 genomes] |
| rs73134197 | 0.90[EUR][1000 genomes] |
| rs73136126 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs73136130 | 0.81[EUR][1000 genomes] |
| rs73136141 | 1.00[AMR][1000 genomes] |
| rs73136146 | 1.00[AMR][1000 genomes] |
| rs73136158 | 1.00[AMR][1000 genomes] |
| rs73138178 | 1.00[AMR][1000 genomes] |
| rs73138180 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73138198 | 1.00[AMR][1000 genomes] |
| rs73147162 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877111 | chr3:85892098-86044224 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 3 | nsv470727 | chr3:85917289-86044224 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 4 | nsv590913 | chr3:85917289-86044224 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 5 | nsv877112 | chr3:85964737-86083716 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86028000-86043000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
