Variant report

Variant	rs11927233
Chromosome Location	chr3:86049000-86049001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11127909	1.00[CEU][hapmap]
rs4629352	1.00[CEU][hapmap]
rs5014408	1.00[CEU][hapmap]
rs73134138	1.00[EUR][1000 genomes]
rs73134140	1.00[EUR][1000 genomes]
rs73134148	1.00[EUR][1000 genomes]
rs73134155	1.00[EUR][1000 genomes]
rs73134159	1.00[EUR][1000 genomes]
rs73134162	1.00[EUR][1000 genomes]
rs73134176	1.00[EUR][1000 genomes]
rs73134181	1.00[EUR][1000 genomes]
rs73134182	1.00[EUR][1000 genomes]
rs73134184	1.00[EUR][1000 genomes]
rs73134192	1.00[EUR][1000 genomes]
rs73134197	0.90[EUR][1000 genomes]
rs73136126	0.81[EUR][1000 genomes]
rs73136130	0.81[EUR][1000 genomes]
rs7430551	1.00[CEU][hapmap]
rs9811856	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:86049000-86049400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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