Variant report

Variant	rs553636882
Chromosome Location	chr11:63581400-63581401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr11:63581333-63581440	K562	blood:	n/a	n/a
2	POLR2A	chr11:63580528-63581482	MCF10A-Er-Src	breast:	n/a	n/a
3	ZBTB7A	chr11:63581255-63581782	K562	blood:	n/a	chr11:63581567-63581576
4	REST	chr11:63580337-63582275	H1-neurons	neurons:	n/a	chr11:63581580-63581593 chr11:63581442-63581455 chr11:63581574-63581587 chr11:63581319-63581332
5	MAX	chr11:63580574-63581628	H1-hESC	embryonic stem cell:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
6	RCOR1	chr11:63581179-63581632	GM12878	blood:	n/a	n/a
7	ELF1	chr11:63581027-63581921	GM12878	blood:	n/a	chr11:63581306-63581315 chr11:63581322-63581334 chr11:63581305-63581316 chr11:63581127-63581139 chr11:63581304-63581317
8	ELF1	chr11:63581098-63581683	HepG2	liver:	n/a	chr11:63581306-63581315 chr11:63581322-63581334 chr11:63581305-63581316 chr11:63581127-63581139 chr11:63581304-63581317
9	ELK1	chr11:63581155-63581620	GM12878	blood:	n/a	n/a
10	GABPA	chr11:63581347-63581684	HepG2	liver:	n/a	n/a
11	POLR2A	chr11:63581050-63581827	U87	brain:	n/a	n/a
12	MAX	chr11:63581106-63581669	GM12878	blood:	n/a	chr11:63581504-63581514
13	SIN3A	chr11:63581190-63581669	GM12878	blood:	n/a	chr11:63581580-63581593
14	MAZ	chr11:63580253-63581942	K562	blood:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
15	CHD1	chr11:63581105-63581402	GM12878	blood:	n/a	n/a
16	RAD21	chr11:63581139-63581724	IMR90	lung:	n/a	n/a
17	POLR2A	chr11:63580588-63581691	MCF-7	breast:	n/a	n/a
18	POLR2A	chr11:63580667-63581564	GM12878	blood:	n/a	n/a
19	POLR2A	chr11:63580097-63581875	HepG2	liver:	n/a	n/a
20	ZNF143	chr11:63580697-63581677	GM12878	blood:	n/a	chr11:63581327-63581337
21	E2F4	chr11:63580402-63581429	MCF10A-Er-Src	breast:	n/a	chr11:63580762-63580774 chr11:63580761-63580772
22	RUNX3	chr11:63580851-63581776	GM12878	blood:	n/a	n/a
23	TBP	chr11:63580577-63582115	H1-hESC	embryonic stem cell:	n/a	n/a
24	GABPA	chr11:63581268-63581832	MCF-7	breast:	n/a	chr11:63581725-63581734
25	POLR2A	chr11:63580642-63581780	GM12878	blood:	n/a	n/a
26	POLR2A	chr11:63580310-63582417	SK-N-MC	brain:	n/a	n/a
27	ELF1	chr11:63580730-63581804	K562	blood:	n/a	chr11:63581306-63581315 chr11:63581322-63581334 chr11:63581305-63581316 chr11:63581127-63581139 chr11:63581304-63581317
28	POLR2A	chr11:63580644-63581830	ProgFib	skin:	n/a	n/a
29	RFX5	chr11:63581260-63581936	Hela-S3	cervix:	n/a	n/a
30	BHLHE40	chr11:63580589-63581657	GM12878	blood:	n/a	n/a
31	POLR2A	chr11:63580574-63582320	GM12878	blood:	n/a	n/a
32	ZBTB7A	chr11:63581000-63581883	ECC-1	luminal epithelium:	n/a	chr11:63581567-63581576
33	TCF7L2	chr11:63580598-63581720	HCT-116	colon:	n/a	n/a
34	POLR2A	chr11:63580410-63582089	K562	blood:	n/a	n/a
35	ZKSCAN1	chr11:63581171-63581563	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr11:63580501-63581840	HUVEC	blood vessel:	n/a	n/a
37	E2F6	chr11:63579940-63581635	K562	blood:	n/a	chr11:63580762-63580774 chr11:63581426-63581440 chr11:63581429-63581443
38	MAX	chr11:63580316-63582099	ECC-1	luminal epithelium:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
39	POLR2A	chr11:63580553-63581465	A549	lung:	n/a	n/a
40	HA-E2F1	chr11:63580203-63581657	MCF-7	breast:	n/a	chr11:63581078-63581089 chr11:63580762-63580774 chr11:63581426-63581440 chr11:63581429-63581443
41	MAX	chr11:63580293-63581839	HepG2	liver:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
42	MYC	chr11:63581230-63581599	K562	blood:	n/a	chr11:63581504-63581514
43	MAX	chr11:63580232-63581859	A549	lung:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
44	POLR2A	chr11:63580552-63582008	GM18526	blood:	n/a	n/a
45	GABPA	chr11:63581232-63581765	A549	lung:	n/a	chr11:63581725-63581734
46	RELA	chr11:63580603-63581521	GM15510	blood:	n/a	chr11:63580664-63580673 chr11:63580664-63580673
47	MAZ	chr11:63580254-63582692	IMR90	lung:	n/a	chr11:63580766-63580776 chr11:63581079-63581089 chr11:63580907-63580917 chr11:63581504-63581514
48	POLR2A	chr11:63580802-63581527	GM12892	blood:	n/a	n/a
49	ELF1	chr11:63581080-63581496	K562	blood:	n/a	chr11:63581306-63581315 chr11:63581322-63581334 chr11:63581305-63581316 chr11:63581127-63581139 chr11:63581304-63581317
50	POLR2A	chr11:63580554-63581773	NB4	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:63579552..63584409-chr11:63604789..63609677,6	K562	blood:
2	chr11:63580495..63581496-chr14:105956780..105958017,3	Hela-S3	cervix:
3	chr11:63580750..63581424-chr9:128003259..128003826,2	Hela-S3	cervix:
4	chr11:63580937..63581636-chr4:166033563..166034366,2	Hela-S3	cervix:
5	chr11:63579193..63582428-chr11:63682051..63685961,4	K562	blood:
6	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
7	chr11:63570205..63572019-chr11:63580900..63582897,2	MCF-7	breast:
8	chr11:63581119..63583081-chr11:63638472..63640533,2	K562	blood:
9	chr11:63581060..63583015-chr11:63654229..63655873,2	MCF-7	breast:
10	chr11:63580161..63582030-chr11:63668287..63670430,2	MCF-7	breast:
11	chr11:63577221..63582686-chr11:63583021..63587487,9	MCF-7	breast:
12	chr11:63448971..63451551-chr11:63580454..63582597,3	K562	blood:
13	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
14	chr11:63448233..63451551-chr11:63578408..63582128,5	K562	blood:
15	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
16	chr11:63436319..63439202-chr11:63579775..63581446,2	MCF-7	breast:
17	chr11:63580176..63582428-chr11:63682563..63684680,2	K562	blood:
18	chr11:63437085..63438927-chr11:63580871..63582709,2	MCF-7	breast:
19	chr11:63535403..63536236-chr11:63580885..63581952,3	MCF-7	breast:
20	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
21	chr11:63579430..63582335-chr11:63993670..63995611,2	K562	blood:
22	chr11:63535333..63536207-chr11:63581006..63582322,3	MCF-7	breast:
23	chr11:62520403..62522717-chr11:63579678..63581641,2	MCF-7	breast:
24	chr11:63580858..63581436-chr5:40834265..40835260,2	Hela-S3	cervix:
25	chr11:63579552..63583589-chr11:63604564..63608557,6	K562	blood:
26	chr11:63580678..63581483-chrX:19002609..19003358,2	Hela-S3	cervix:
27	chr11:63580299..63582440-chr11:63655697..63658299,3	K562	blood:

Variant related genes	Relation type
C11orf84	TF binding region
ENSG00000188070	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000184743	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000255651	Chromatin interaction
ENSG00000044446	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000170088	Chromatin interaction
ENSG00000044574	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000168005	Chromatin interaction
ENSG00000185670	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000133318	Chromatin interaction
ENSG00000149761	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3413647	chr11:63550425-63582789	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv33730	chr11:63581200-63586085	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:135 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63579200-63581800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr11:63579400-63582200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:63579600-63581800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:63579800-63582600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr11:63580000-63581800	Active TSS	Brain Substantia Nigra	brain
6	chr11:63580000-63582000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:63580000-63582000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:63580000-63582000	Active TSS	Fetal Kidney	kidney
9	chr11:63580000-63582000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr11:63580000-63582200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:63580200-63581600	Active TSS	Psoas Muscle	Psoas
12	chr11:63580200-63582000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:63580200-63582200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:63580200-63582200	Active TSS	HepG2	liver
15	chr11:63580200-63582600	Active TSS	Right Atrium	heart
16	chr11:63580400-63581800	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr11:63580400-63581800	Active TSS	Aorta	Aorta
18	chr11:63580400-63581800	Active TSS	Brain Angular Gyrus	brain
19	chr11:63580400-63581800	Active TSS	Brain Anterior Caudate	brain
20	chr11:63580400-63581800	Active TSS	Brain Hippocampus Middle	brain
21	chr11:63580400-63581800	Active TSS	Fetal Brain Female	brain
22	chr11:63580400-63581800	Active TSS	Rectal Smooth Muscle	rectum
23	chr11:63580400-63582000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:63580400-63582000	Active TSS	Fetal Heart	heart
25	chr11:63580400-63582000	Active TSS	Gastric	stomach
26	chr11:63580400-63582200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:63580400-63582200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:63580400-63582200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:63580400-63582200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:63580400-63582200	Active TSS	Lung	lung
31	chr11:63580400-63582200	Active TSS	A549	lung
32	chr11:63580400-63582200	Active TSS	NHDF-Ad	bronchial
33	chr11:63580400-63582400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:63580400-63582800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:63580600-63581400	Active TSS	Primary B cells from peripheral blood	blood
36	chr11:63580600-63581400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:63580600-63581400	Active TSS	Stomach Smooth Muscle	stomach
38	chr11:63580600-63581400	Active TSS	Spleen	Spleen
39	chr11:63580600-63581600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:63580600-63581600	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr11:63580600-63581600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:63580600-63581600	Active TSS	Pancreas	Pancrea
43	chr11:63580600-63581600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr11:63580600-63581600	Active TSS	Right Ventricle	heart
45	chr11:63580600-63581600	Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr11:63580600-63581600	Active TSS	Thymus	Thymus
47	chr11:63580600-63581600	Active TSS	K562	blood
48	chr11:63580600-63581800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:63580600-63581800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:63580600-63581800	Active TSS	Primary T helper cells PMA-I stimulated	--

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