Variant report

Variant	rs553680837
Chromosome Location	chr19:36210940-36210941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36207787..36211113-chr19:36265053..36268029,3	K562	blood:
2	chr19:36208210..36211144-chr19:36264877..36267691,4	MCF-7	breast:
3	chr19:36207379..36214815-chr19:36234227..36241330,25	MCF-7	breast:
4	chr19:36205476..36213390-chr19:36226310..36233646,27	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105663	Chromatin interaction
ENSG00000004777	Chromatin interaction
ENSG00000267439	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000188223	Chromatin interaction
ENSG00000126246	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000267796	Chromatin interaction
ENSG00000205155	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv458566	chr19:36156588-36265508	Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	nsv579422	chr19:36156588-36265508	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv911633	chr19:36206050-36283847	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
8	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
9	nsv543996	chr19:36210269-36265431	Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
10	nsv1057830	chr19:36210269-36279794	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	nsv543997	chr19:36210269-36279794	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36210000-36211200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr19:36210000-36211400	Weak transcription	Aorta	Aorta
3	chr19:36210000-36212800	Genic enhancers	Spleen	Spleen
4	chr19:36210200-36211000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr19:36210200-36211000	Enhancers	Fetal Heart	heart
6	chr19:36210200-36211000	Genic enhancers	Fetal Muscle Leg	muscle
7	chr19:36210200-36211000	Weak transcription	Left Ventricle	heart
8	chr19:36210200-36211000	Genic enhancers	Lung	lung
9	chr19:36210200-36211200	Genic enhancers	Fetal Stomach	stomach
10	chr19:36210200-36211400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr19:36210200-36211800	Genic enhancers	Placenta	Placenta
12	chr19:36210200-36212400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr19:36210400-36211000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr19:36210400-36211000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr19:36210400-36211000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr19:36210400-36211000	Enhancers	Primary hematopoietic stem cells	blood
17	chr19:36210400-36211000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr19:36210400-36211000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr19:36210400-36211000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:36210400-36211000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:36210400-36211000	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
22	chr19:36210400-36211000	Genic enhancers	Monocytes-CD14+_RO01746	blood
23	chr19:36210400-36211200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr19:36210400-36211200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:36210400-36211200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr19:36210400-36211200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr19:36210400-36212800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:36210400-36213400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr19:36210400-36213400	Weak transcription	HSMMtube	muscle
30	chr19:36210400-36213800	Genic enhancers	Stomach Smooth Muscle	stomach
31	chr19:36210400-36215400	Weak transcription	Psoas Muscle	Psoas
32	chr19:36210400-36215600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr19:36210600-36211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr19:36210600-36211000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr19:36210600-36211000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr19:36210600-36211000	Weak transcription	Esophagus	oesophagus
37	chr19:36210600-36211000	Genic enhancers	Placenta Amnion	Placenta Amnion
38	chr19:36210600-36211000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr19:36210600-36211000	Flanking Active TSS	HepG2	liver
40	chr19:36210600-36211200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr19:36210600-36211200	Enhancers	Liver	Liver
42	chr19:36210600-36211200	Weak transcription	Brain Anterior Caudate	brain
43	chr19:36210600-36211200	Genic enhancers	Duodenum Smooth Muscle	Duodenum
44	chr19:36210600-36211400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr19:36210600-36211400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:36210600-36211400	Genic enhancers	Fetal Brain Female	brain
47	chr19:36210600-36211400	Strong transcription	Hela-S3	cervix
48	chr19:36210600-36211600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr19:36210600-36211600	Weak transcription	Primary B cells from cord blood	blood
50	chr19:36210600-36211600	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links