Variant report

Variant	rs554100603
Chromosome Location	chr10:21823348-21823349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr10:21822445-21823413	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:21821815-21823484	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr10:21822271-21824042	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr10:21822101-21824003	GM12892	blood:	n/a	n/a
5	CHD2	chr10:21822394-21823869	Hela-S3	cervix:	n/a	chr10:21822855-21822865 chr10:21823239-21823249 chr10:21822999-21823009
6	SIN3A	chr10:21822372-21824754	H1-hESC	embryonic stem cell:	n/a	chr10:21823095-21823106 chr10:21824304-21824315 chr10:21822916-21822927 chr10:21823860-21823871
7	EP300	chr10:21822245-21823508	SK-N-SH	brain:	n/a	chr10:21823142-21823151 chr10:21822899-21822915 chr10:21822988-21822997 chr10:21822976-21822992
8	MXI1	chr10:21822229-21824982	IMR90	lung:	n/a	n/a
9	CREB1	chr10:21822387-21823467	A549	lung:	n/a	n/a
10	ELF1	chr10:21822360-21823397	HepG2	liver:	n/a	chr10:21823094-21823103 chr10:21823142-21823154 chr10:21822988-21822997
11	POLR2A	chr10:21822264-21823756	PFSK-1	brain:	n/a	n/a
12	EP300	chr10:21822725-21823456	H1-hESC	embryonic stem cell:	n/a	chr10:21823142-21823151 chr10:21822899-21822915 chr10:21822988-21822997 chr10:21822976-21822992
13	EGR1	chr10:21822587-21823519	MCF-7	breast:	n/a	chr10:21823102-21823111 chr10:21823160-21823169 chr10:21823004-21823017 chr10:21823235-21823245 chr10:21822860-21822870 chr10:21823041-21823055 chr10:21823002-21823012
14	ZNF263	chr10:21822242-21823394	HEK293-T-REx	kidney:	n/a	chr10:21823130-21823139
15	TAF1	chr10:21822315-21823478	HepG2	liver:	n/a	n/a
16	SIN3AK20	chr10:21823158-21823399	PFSK-1	brain:	n/a	n/a
17	MAZ	chr10:21822089-21824554	K562	blood:	n/a	chr10:21824231-21824241 chr10:21823920-21823929
18	POLR2A	chr10:21822090-21823752	PFSK-1	brain:	n/a	n/a
19	HDAC2	chr10:21822291-21823385	HepG2	liver:	n/a	n/a
20	MAX	chr10:21822502-21824512	K562	blood:	n/a	chr10:21824231-21824241 chr10:21823920-21823929
21	MAX	chr10:21822317-21823910	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr10:21822076-21823435	K562	blood:	n/a	n/a
23	POLR2A	chr10:21822174-21824361	HEK293	kidney:	n/a	n/a
24	POLR2A	chr10:21822282-21824493	GM18951	blood:	n/a	n/a
25	ZBTB7A	chr10:21822686-21823473	K562	blood:	n/a	n/a
26	TAF1	chr10:21822403-21823407	MCF-7	breast:	n/a	n/a
27	POLR2A	chr10:21822132-21824402	K562	blood:	n/a	n/a
28	EBF1	chr10:21822443-21823350	GM12878	blood:	n/a	chr10:21822798-21822807 chr10:21822798-21822807
29	TAF7	chr10:21822394-21823466	H1-hESC	embryonic stem cell:	n/a	n/a
30	EP300	chr10:21822389-21823370	HepG2	liver:	n/a	chr10:21823142-21823151 chr10:21822899-21822915 chr10:21822988-21822997 chr10:21822976-21822992
31	SIN3AK20	chr10:21822474-21823452	SK-N-SH	brain:	n/a	n/a
32	POLR2A	chr10:21821957-21824615	K562	blood:	n/a	n/a
33	POLR2A	chr10:21822122-21823469	K562	blood:	n/a	n/a
34	POLR2A	chr10:21822419-21823772	IMR90	lung:	n/a	n/a
35	MAX	chr10:21822381-21824039	ECC-1	luminal epithelium:	n/a	chr10:21823920-21823929
36	MAZ	chr10:21822340-21824687	IMR90	lung:	n/a	chr10:21824584-21824595 chr10:21824231-21824241 chr10:21823920-21823929 chr10:21824586-21824595
37	CEBPD	chr10:21822367-21823535	HepG2	liver:	n/a	n/a
38	CEBPD	chr10:21822647-21823349	HepG2	liver:	n/a	n/a
39	HEY1	chr10:21822054-21823484	K562	blood:	n/a	chr10:21823098-21823113
40	POLR2A	chr10:21822058-21824044	Raji	blood:	n/a	n/a
41	POLR2A	chr10:21822264-21823894	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr10:21822010-21824768	K562	blood:	n/a	n/a
43	POLR2A	chr10:21822294-21824384	HepG2	liver:	n/a	n/a
44	YY1	chr10:21822267-21823360	H1-hESC	embryonic stem cell:	n/a	chr10:21823237-21823248 chr10:21822901-21822915 chr10:21823140-21823151 chr10:21822979-21822993
45	YY1	chr10:21822342-21823498	K562	blood:	n/a	chr10:21823237-21823248 chr10:21822901-21822915 chr10:21823140-21823151 chr10:21822979-21822993
46	POLR2A	chr10:21822205-21824243	Hela-S3	cervix:	n/a	n/a
47	HEY1	chr10:21823250-21823456	K562	blood:	n/a	n/a
48	YY1	chr10:21823165-21823462	SK-N-SH_RA	brain:	n/a	chr10:21823237-21823248
49	POLR2A	chr10:21821981-21823732	HepG2	liver:	n/a	n/a
50	TAF1	chr10:21822342-21824463	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:21784105..21788419-chr10:21820020..21825934,15	K562	blood:
2	chr1:6844565..6845211-chr10:21822402..21823399,2	NB4	blood:
3	chr10:21784774..21789957-chr10:21820858..21826220,9	MCF-7	breast:
4	chr10:21823004..21824663-chr10:22608853..22611559,3	K562	blood:
5	chr10:21462486..21464752-chr10:21822711..21824780,2	MCF-7	breast:
6	chr10:21784405..21786921-chr10:21820578..21824484,6	MCF-7	breast:

Variant related genes	Relation type
MLLT10	TF binding region
ENSG00000078114	Chromatin interaction
ENSG00000204682	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000231920	Chromatin interaction
ENSG00000222071	Chromatin interaction
ENSG00000237436	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825286	chr10:21757784-21838890	Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv825288	chr10:21759085-21831354	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
5	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
6	nsv825290	chr10:21777857-21830878	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
7	nsv894936	chr10:21781589-21827796	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
8	nsv550200	chr10:21782842-21824727	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv894937	chr10:21782842-21827796	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv894938	chr10:21784899-21827796	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
11	nsv894939	chr10:21789406-21830104	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv825291	chr10:21792100-21830946	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv894940	chr10:21796081-21823525	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
14	nsv550201	chr10:21796081-21824727	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv894941	chr10:21796081-21827796	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv894942	chr10:21798241-21823525	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
17	nsv894943	chr10:21798241-21824619	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv894944	chr10:21798241-21827796	Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv894945	chr10:21798241-21830104	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
20	nsv894946	chr10:21798241-21831215	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
21	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
22	esv3422795	chr10:21821971-21825319	Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
23	esv3327865	chr10:21822171-21824869	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21821200-21824600	Active TSS	Psoas Muscle	Psoas
2	chr10:21821400-21824400	Active TSS	A549	lung
3	chr10:21821600-21824400	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:21821600-21824400	Active TSS	K562	blood
5	chr10:21821800-21824200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:21821800-21824600	Active TSS	Colonic Mucosa	Colon
7	chr10:21821800-21824800	Active TSS	Aorta	Aorta
8	chr10:21821800-21824800	Active TSS	Right Ventricle	heart
9	chr10:21821800-21824800	Active TSS	Thymus	Thymus
10	chr10:21822000-21824600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:21822000-21824600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr10:21822000-21824800	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr10:21822000-21825000	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr10:21822000-21825200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:21822200-21823800	ZNF genes & repeats	Fetal Brain Male	brain
16	chr10:21822200-21824400	Active TSS	Brain Angular Gyrus	brain
17	chr10:21822200-21824400	Active TSS	Brain Hippocampus Middle	brain
18	chr10:21822200-21824400	Active TSS	Fetal Brain Female	brain
19	chr10:21822200-21824600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:21822200-21824600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr10:21822200-21824600	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr10:21822200-21824600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:21822200-21824600	Active TSS	Brain Substantia Nigra	brain
24	chr10:21822200-21824600	Active TSS	Colon Smooth Muscle	Colon
25	chr10:21822200-21824600	Active TSS	Esophagus	oesophagus
26	chr10:21822200-21824600	Active TSS	Left Ventricle	heart
27	chr10:21822200-21824600	Active TSS	Lung	lung
28	chr10:21822200-21824600	Active TSS	Pancreas	Pancrea
29	chr10:21822200-21824600	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr10:21822200-21824600	Active TSS	Small Intestine	intestine
31	chr10:21822200-21824800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:21822200-21824800	Active TSS	Brain Anterior Caudate	brain
33	chr10:21822200-21824800	Active TSS	Fetal Intestine Large	intestine
34	chr10:21822200-21824800	Active TSS	Ovary	ovary
35	chr10:21822200-21825000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr10:21822200-21825000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:21822200-21825000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:21822200-21825400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:21822400-21824200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:21822400-21824200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr10:21822400-21824200	Active TSS	Liver	Liver
42	chr10:21822400-21824200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr10:21822400-21824200	Active TSS	Placenta Amnion	Placenta Amnion
44	chr10:21822400-21824200	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr10:21822400-21824200	Active TSS	Spleen	Spleen
46	chr10:21822400-21824400	Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr10:21822400-21824400	Active TSS	Brain Cingulate Gyrus	brain
48	chr10:21822400-21824400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:21822400-21824400	Active TSS	HSMMtube	muscle
50	chr10:21822400-21824600	Active TSS	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links