Variant report

Variant	rs554164862
Chromosome Location	chr12:9012151-9012152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049949	chr12:9008609-9049198	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv15931	chr12:9010015-9013761	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv516260	chr12:9010671-9013329	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3693107	chr12:9010671-9013783	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv442254	chr12:9011241-9013756	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:8987600-9040000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:8987800-9012800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:8988200-9012800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:8994800-9016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:8996000-9040000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:8998800-9014600	Weak transcription	Right Atrium	heart
9	chr12:8999000-9016400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:9000800-9012400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:9005000-9013400	Weak transcription	Brain Anterior Caudate	brain
12	chr12:9005200-9017800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:9007000-9029600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:9007200-9027600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:9009200-9012800	Weak transcription	K562	blood
16	chr12:9009600-9012600	Strong transcription	Esophagus	oesophagus
17	chr12:9011400-9012800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:9011800-9021600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:9011800-9029800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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