Variant report

Variant	rs554796727
Chromosome Location	chr15:55533516-55533517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:55528122..55530871-chr15:55531948..55534527,2	MCF-7	breast:
2	chr15:55527813..55534361-chr15:55567580..55576356,11	K562	blood:
3	chr15:55517285..55519190-chr15:55531855..55534772,2	K562	blood:
4	chr15:55523127..55525294-chr15:55532956..55534638,2	MCF-7	breast:
5	chr15:55530634..55534857-chr15:55538048..55543600,7	K562	blood:
6	chr15:55533451..55535034-chr15:55546175..55548758,2	K562	blood:
7	chr15:55526980..55531263-chr15:55533201..55537499,6	K562	blood:
8	chr15:55520811..55529435-chr15:55529925..55534726,12	K562	blood:
9	chr15:55532146..55535139-chr15:55535159..55539232,4	K562	blood:
10	chr15:55532304..55535313-chr15:55545055..55548758,3	K562	blood:
11	chr15:55532208..55534403-chr15:55539105..55541114,2	MCF-7	breast:
12	chr15:55531824..55534011-chr15:55559781..55562269,2	K562	blood:
13	chr15:55529753..55531504-chr15:55533201..55534943,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000069974	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv1049977	chr15:55502508-55555694	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1036924	chr15:55527874-55616480	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv569522	chr15:55532211-55611126	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55489800-55540200	Weak transcription	Esophagus	oesophagus
2	chr15:55490000-55562800	Weak transcription	Ovary	ovary
3	chr15:55509400-55541600	Weak transcription	Small Intestine	intestine
4	chr15:55512800-55541600	Weak transcription	Colonic Mucosa	Colon
5	chr15:55514200-55540400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:55514200-55545200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:55514400-55541200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:55514600-55534200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:55514600-55542600	Weak transcription	Hela-S3	cervix
10	chr15:55514600-55543200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:55514800-55539800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:55514800-55560400	Weak transcription	Spleen	Spleen
13	chr15:55516000-55559600	Weak transcription	Fetal Stomach	stomach
14	chr15:55517600-55542800	Weak transcription	Thymus	Thymus
15	chr15:55517800-55539600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:55517800-55542200	Weak transcription	Fetal Thymus	thymus
17	chr15:55517800-55542800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr15:55518000-55539200	Weak transcription	Fetal Lung	lung
19	chr15:55518600-55533600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr15:55518600-55539400	Weak transcription	Placenta	Placenta
21	chr15:55518800-55541200	Weak transcription	Aorta	Aorta
22	chr15:55520800-55574800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:55521000-55541400	Weak transcription	Fetal Intestine Large	intestine
24	chr15:55522800-55534200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:55522800-55540600	Weak transcription	Liver	Liver
26	chr15:55522800-55543200	Weak transcription	Pancreas	Pancrea
27	chr15:55522800-55547000	Weak transcription	GM12878-XiMat	blood
28	chr15:55523200-55542600	Weak transcription	HMEC	breast
29	chr15:55526800-55537200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:55526800-55543200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:55527000-55534600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:55527000-55542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:55527000-55544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:55527200-55538800	Weak transcription	Primary B cells from cord blood	blood
35	chr15:55527200-55542800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:55531800-55533600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr15:55531800-55535400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:55531800-55535800	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr15:55532000-55534400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr15:55532200-55533800	Enhancers	Primary T cells from cord blood	blood
41	chr15:55532200-55534400	Enhancers	HUVEC	blood vessel
42	chr15:55532400-55533800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr15:55532400-55534400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:55532400-55534600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr15:55532600-55537400	Weak transcription	Lung	lung
46	chr15:55532800-55533600	Enhancers	Stomach Mucosa	stomach
47	chr15:55532800-55535200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:55532800-55539200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:55532800-55539200	Weak transcription	Gastric	stomach
50	chr15:55532800-55539400	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links