Variant report

Variant	rs555654818
Chromosome Location	chr9:16040932-16040933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:16039078-16040996	ECC-1	luminal epithelium:	n/a	chr9:16040102-16040109 chr9:16040100-16040110
2	FOXM1	chr9:16039743-16041030	ECC-1	luminal epithelium:	n/a	n/a
3	NFIC	chr9:16039074-16040990	ECC-1	luminal epithelium:	n/a	n/a
4	MAX	chr9:16039029-16041411	ECC-1	luminal epithelium:	n/a	chr9:16039302-16039312
5	EP300	chr9:16039015-16041060	ECC-1	luminal epithelium:	n/a	chr9:16040874-16040888
6	NFIC	chr9:16039069-16040974	ECC-1	luminal epithelium:	n/a	n/a
7	TEAD4	chr9:16039101-16040970	ECC-1	luminal epithelium:	n/a	n/a
8	FOXM1	chr9:16040006-16041147	ECC-1	luminal epithelium:	n/a	n/a
9	SRF	chr9:16040088-16041080	ECC-1	luminal epithelium:	n/a	chr9:16040686-16040699 chr9:16040684-16040701 chr9:16040687-16040698 chr9:16040684-16040698 chr9:16040681-16040698 chr9:16040687-16040701 chr9:16040683-16040701 chr9:16040688-16040697 chr9:16040686-16040699 chr9:16040683-16040697 chr9:16040685-16040700 chr9:16040688-16040702 chr9:16040685-16040699 chr9:16040688-16040699
10	SRF	chr9:16040201-16041034	ECC-1	luminal epithelium:	n/a	chr9:16040686-16040699 chr9:16040684-16040701 chr9:16040687-16040698 chr9:16040684-16040698 chr9:16040681-16040698 chr9:16040687-16040701 chr9:16040683-16040701 chr9:16040688-16040697 chr9:16040686-16040699 chr9:16040683-16040697 chr9:16040685-16040700 chr9:16040688-16040702 chr9:16040685-16040699 chr9:16040688-16040699

Variant related genes	Relation type
CCDC171	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1025555	chr9:16022186-16064158	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2761506	chr9:16040491-16093736	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16030800-16050000	Weak transcription	Aorta	Aorta
2	chr9:16034000-16043600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16039000-16041400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:16039000-16041400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:16039000-16041400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:16039000-16041400	Enhancers	Fetal Kidney	kidney
7	chr9:16039000-16041400	Enhancers	Rectal Smooth Muscle	rectum
8	chr9:16039000-16041600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:16039000-16041600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:16039200-16041200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:16039200-16041400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr9:16039200-16041400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:16039200-16041400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:16039200-16041400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:16039200-16041400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:16039200-16041400	Enhancers	Fetal Lung	lung
17	chr9:16039200-16041400	Enhancers	Ovary	ovary
18	chr9:16039200-16041400	Enhancers	NH-A	brain
19	chr9:16039200-16041600	Enhancers	Fetal Muscle Leg	muscle
20	chr9:16039200-16042800	Enhancers	Fetal Stomach	stomach
21	chr9:16039400-16041000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr9:16039400-16041400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:16039600-16041200	Enhancers	Colon Smooth Muscle	Colon
24	chr9:16039600-16042400	Enhancers	Adipose Nuclei	Adipose
25	chr9:16039800-16042600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:16039800-16043400	Weak transcription	Osteobl	bone
27	chr9:16040000-16043600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:16040200-16041200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:16040400-16041000	Enhancers	A549	lung
30	chr9:16040400-16041400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr9:16040400-16043600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:16040600-16041000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:16040600-16041200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:16040600-16041200	Weak transcription	Fetal Intestine Large	intestine
35	chr9:16040600-16042000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:16040600-16057600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:16040800-16041000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
38	chr9:16040800-16041200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:16040800-16041200	Enhancers	Stomach Smooth Muscle	stomach
40	chr9:16040800-16043400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links