Variant report

Variant	rs555745558
Chromosome Location	chr6:28046665-28046666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:28046640-28046965	HepG2	liver:	n/a	chr6:28046793-28046804
2	NRF1	chr6:28046610-28046761	GM12878	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28046111..28048022-chr6:28095723..28098620,2	K562	blood:
2	chr6:27859779..27863183-chr6:28046529..28048591,3	MCF-7	breast:
3	chr6:28046527..28048657-chr6:28057860..28059913,2	MCF-7	breast:
4	chr6:28044681..28046793-chr6:28367579..28369114,2	K562	blood:
5	chr6:28045344..28046935-chr6:28047195..28048919,2	K562	blood:
6	chr6:28044713..28049958-chr6:28107484..28111355,5	K562	blood:
7	chr6:27864591..27866445-chr6:28044322..28046847,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZKSCAN4-4	chr6:28046573-28046750	NONHSAT108424
2	lnc-ZKSCAN4-4	chr6:28046570-28046750	ENSG00000272009.1

No data

No data

Variant related genes	Relation type
ZNF165	TF binding region
ENSG00000233224	Chromatin interaction
ENSG00000238610	Chromatin interaction
ENSG00000219891	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000197279	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv33436	chr6:28044346-28049043	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823466	chr6:28046620-28048635	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28043200-28047800	Weak transcription	Spleen	Spleen
2	chr6:28045200-28047600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:28045600-28047800	Weak transcription	Right Atrium	heart
4	chr6:28045800-28047800	Weak transcription	Fetal Brain Male	brain
5	chr6:28046000-28047800	Weak transcription	Fetal Heart	heart
6	chr6:28046200-28047000	Enhancers	GM12878-XiMat	blood
7	chr6:28046200-28047400	Enhancers	K562	blood
8	chr6:28046400-28047600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:28046600-28046800	Enhancers	Left Ventricle	heart
10	chr6:28046600-28046800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:28046600-28047400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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