Variant report

Variant	rs555975
Chromosome Location	chr2:169790935-169790936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169786175..169787842-chr2:169790022..169792069,2	MCF-7	breast:
2	chr2:169790519..169792634-chr2:169793983..169795668,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1101531	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1101532	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1101533	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1101534	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1581397	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16856252	0.88[ASN][1000 genomes]
rs2250677	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2544360	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2544367	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2685803	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2685804	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2685805	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685806	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685807	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685808	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685810	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685811	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685812	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685813	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2685814	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2947987	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3755157	0.81[ASN][1000 genomes]
rs3755158	0.89[ASN][1000 genomes]
rs472614	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs473351	0.89[EUR][1000 genomes]
rs478333	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs479682	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs480562	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs482508	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs484066	0.89[ASN][1000 genomes]
rs495714	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs496550	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs497692	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs500432	0.82[EUR][1000 genomes]
rs503931	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs504979	0.84[ASN][1000 genomes]
rs519035	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs519887	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs527150	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs531772	0.88[EUR][1000 genomes]
rs551754	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55700007	0.81[ASN][1000 genomes]
rs565412	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs567074	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs575671	0.88[EUR][1000 genomes]
rs579275	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58512362	0.83[ASN][1000 genomes]
rs72886761	0.81[ASN][1000 genomes]
rs853772	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs853775	0.81[EUR][1000 genomes]
rs853776	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs853778	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs853779	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs853780	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853781	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853782	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853783	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853784	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853785	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853786	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853788	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs853790	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs853791	0.81[EUR][1000 genomes]
rs860510	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs862662	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs864929	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv459943	chr2:169756930-169799010	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv583600	chr2:169756930-169799010	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169787400-169792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:169788200-169802600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:169789400-169795200	Strong transcription	Liver	Liver
4	chr2:169790600-169791600	Enhancers	K562	blood
5	chr2:169790800-169792800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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