Variant report

Variant	rs58512362
Chromosome Location	chr2:169795467-169795468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:169792537..169795729-chr2:169800668..169803473,3	K562	blood:
2	chr2:161488018..161488821-chr2:169795050..169795992,2	MCF-7	breast:
3	chr2:169790519..169792634-chr2:169793983..169795668,2	K562	blood:
4	chr2:169628746..169631542-chr2:169795260..169797198,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1101531	0.83[ASN][1000 genomes]
rs1101532	0.89[ASN][1000 genomes]
rs1101533	0.91[ASN][1000 genomes]
rs1101534	0.91[ASN][1000 genomes]
rs1581397	0.93[ASN][1000 genomes]
rs16856252	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16856261	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2250677	0.93[ASN][1000 genomes]
rs2544360	0.96[ASN][1000 genomes]
rs2544367	0.93[ASN][1000 genomes]
rs2685803	0.93[ASN][1000 genomes]
rs2685804	0.93[ASN][1000 genomes]
rs2685805	0.93[ASN][1000 genomes]
rs2685806	0.93[ASN][1000 genomes]
rs2685807	0.93[ASN][1000 genomes]
rs2685808	0.93[ASN][1000 genomes]
rs2685810	0.93[ASN][1000 genomes]
rs2685811	0.91[ASN][1000 genomes]
rs2685812	0.93[ASN][1000 genomes]
rs2685813	0.93[ASN][1000 genomes]
rs2685814	0.93[ASN][1000 genomes]
rs3755157	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755158	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472614	0.86[ASN][1000 genomes]
rs479682	0.92[ASN][1000 genomes]
rs480562	0.92[ASN][1000 genomes]
rs482508	0.92[ASN][1000 genomes]
rs495714	0.84[ASN][1000 genomes]
rs496550	0.84[ASN][1000 genomes]
rs497692	0.84[ASN][1000 genomes]
rs503931	0.83[ASN][1000 genomes]
rs519035	0.84[ASN][1000 genomes]
rs519887	0.84[ASN][1000 genomes]
rs527150	0.84[ASN][1000 genomes]
rs551754	0.84[ASN][1000 genomes]
rs555975	0.83[ASN][1000 genomes]
rs55700007	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs565412	0.91[ASN][1000 genomes]
rs567074	0.88[ASN][1000 genomes]
rs579275	0.84[ASN][1000 genomes]
rs72886761	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs853776	0.87[ASN][1000 genomes]
rs853778	0.83[ASN][1000 genomes]
rs853779	0.85[ASN][1000 genomes]
rs853780	0.91[ASN][1000 genomes]
rs853781	0.91[ASN][1000 genomes]
rs853782	0.91[ASN][1000 genomes]
rs853783	0.91[ASN][1000 genomes]
rs853784	0.91[ASN][1000 genomes]
rs853785	0.91[ASN][1000 genomes]
rs853786	0.91[ASN][1000 genomes]
rs853788	0.92[ASN][1000 genomes]
rs853790	0.91[ASN][1000 genomes]
rs853791	0.85[ASN][1000 genomes]
rs860510	0.93[ASN][1000 genomes]
rs862662	0.85[ASN][1000 genomes]
rs864929	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583599	chr2:169664227-169903096	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv459943	chr2:169756930-169799010	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv583600	chr2:169756930-169799010	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv875382	chr2:169792484-169819824	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169788200-169802600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:169793600-169799800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:169794800-169796400	Weak transcription	K562	blood
4	chr2:169795200-169796000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links