Variant report

Variant	rs555986041
Chromosome Location	chr15:58000025-58000026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3415316	chr15:57999115-58000931	Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57998200-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr15:57998200-58001000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:57998200-58001400	Active TSS	Fetal Kidney	kidney
4	chr15:57998400-58000200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr15:57998400-58000200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr15:57998400-58000200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr15:57998400-58000200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:57998400-58000200	Active TSS	Fetal Muscle Trunk	muscle
9	chr15:57998400-58000200	Active TSS	Ovary	ovary
10	chr15:57998400-58000200	Active TSS	HSMMtube	muscle
11	chr15:57998400-58000800	Active TSS	Aorta	Aorta
12	chr15:57998400-58000800	Active TSS	Right Atrium	heart
13	chr15:57998400-58000800	Active TSS	Right Ventricle	heart
14	chr15:57998600-58000200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:57998600-58000200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:57998600-58000200	Active TSS	Fetal Heart	heart
17	chr15:57998600-58000200	Active TSS	Fetal Muscle Leg	muscle
18	chr15:57998600-58000200	Active TSS	Stomach Mucosa	stomach
19	chr15:57998600-58000200	Active TSS	GM12878-XiMat	blood
20	chr15:57998600-58000200	Active TSS	NHDF-Ad	bronchial
21	chr15:57998600-58000400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr15:57998600-58000400	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr15:57998600-58000400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:57998600-58000400	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr15:57998600-58000400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:57998600-58000400	Active TSS	Fetal Intestine Large	intestine
27	chr15:57998600-58000600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:57998600-58000600	Active TSS	Fetal Intestine Small	intestine
29	chr15:57998600-58000600	Active TSS	Left Ventricle	heart
30	chr15:57998600-58000600	Active TSS	HSMM	muscle
31	chr15:57998600-58000800	Active TSS	Psoas Muscle	Psoas
32	chr15:57998600-58000800	Active TSS	Stomach Smooth Muscle	stomach
33	chr15:57998800-58000200	Active TSS	H1 Cell Line	embryonic stem cell
34	chr15:57998800-58000200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:57998800-58000400	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr15:57998800-58000600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:57999400-58000200	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr15:57999400-58000200	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr15:57999400-58000200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr15:57999400-58000200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:57999400-58000200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:57999400-58000200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr15:57999400-58000200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr15:57999600-58000200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:57999600-58000200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr15:57999600-58000200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr15:57999600-58000200	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr15:57999600-58000200	Flanking Active TSS	Fetal Brain Male	brain
49	chr15:57999600-58000200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr15:57999600-58000400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links