Variant report

Variant	rs555993297
Chromosome Location	chr6:31795016-31795017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:359)
CpG islands
(count:122)
Chromatin interactive
region (count:42)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:359 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31794527-31795791	K562	blood:	n/a	n/a
2	POLR2A	chr6:31794273-31795825	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr6:31794423-31796299	PANC-1	pancreas:	n/a	n/a
4	CHD1	chr6:31794329-31795076	GM12878	blood:	n/a	n/a
5	POLR2A	chr6:31794586-31795087	MCF-7	breast:	n/a	n/a
6	POLR2A	chr6:31794567-31795779	GM18951	blood:	n/a	n/a
7	TAF1	chr6:31794587-31795778	K562	blood:	n/a	n/a
8	KAP1	chr6:31794527-31795579	U2OS	brain:	n/a	n/a
9	SMC3	chr6:31794802-31795181	GM12878	blood:	n/a	n/a
10	PML	chr6:31794264-31795805	K562	blood:	n/a	n/a
11	MTA3	chr6:31794277-31795077	GM12878	blood:	n/a	n/a
12	CHD2	chr6:31794588-31795732	Hela-S3	cervix:	n/a	n/a
13	ETS1	chr6:31794270-31795803	K562	blood:	n/a	n/a
14	SIN3AK20	chr6:31794252-31795861	MCF-7	breast:	n/a	n/a
15	STAT3	chr6:31794590-31795656	MCF10A-Er-Src	breast:	n/a	chr6:31795273-31795285
16	FOXA2	chr6:31794546-31795111	A549	lung:	n/a	n/a
17	RCOR1	chr6:31794341-31795599	GM12878	blood:	n/a	n/a
18	EP300	chr6:31794927-31795708	HepG2	liver:	n/a	n/a
19	MYBL2	chr6:31794700-31795909	HepG2	liver:	n/a	n/a
20	POLR2A	chr6:31794558-31795788	HUVEC	blood vessel:	n/a	n/a
21	YY1	chr6:31794916-31795752	K562	blood:	n/a	n/a
22	GTF2F1	chr6:31794391-31795759	K562	blood:	n/a	n/a
23	RFX5	chr6:31794633-31795688	Hela-S3	cervix:	n/a	chr6:31795444-31795453 chr6:31795360-31795369 chr6:31795238-31795253
24	REST	chr6:31794437-31795147	A549	lung:	n/a	n/a
25	RFX5	chr6:31794705-31795693	K562	blood:	n/a	chr6:31795444-31795453 chr6:31795360-31795369 chr6:31795238-31795253
26	TBL1XR1	chr6:31794375-31795813	K562	blood:	n/a	n/a
27	GABPA	chr6:31794970-31795783	K562	blood:	n/a	n/a
28	SP1	chr6:31794321-31795719	H1-hESC	embryonic stem cell:	n/a	chr6:31795269-31795279 chr6:31795269-31795279 chr6:31795434-31795455 chr6:31794753-31794765 chr6:31795350-31795371 chr6:31795378-31795392 chr6:31794754-31794763 chr6:31794750-31794764
29	POLR2A	chr6:31794442-31795767	Hela-S3	cervix:	n/a	n/a
30	HDAC2	chr6:31794360-31795774	K562	blood:	n/a	n/a
31	SP1	chr6:31794548-31795865	K562	blood:	n/a	chr6:31795269-31795279 chr6:31795269-31795279 chr6:31795434-31795455 chr6:31794753-31794765 chr6:31795350-31795371 chr6:31795378-31795392 chr6:31794754-31794763 chr6:31794750-31794764
32	POLR2A	chr6:31794808-31795403	H1-neurons	neurons:	n/a	n/a
33	POLR2A	chr6:31794679-31796341	GM12891	blood:	n/a	n/a
34	IRF1	chr6:31794413-31795771	K562	blood:	n/a	chr6:31794949-31794969 chr6:31794753-31794767
35	BHLHE40	chr6:31794646-31795591	GM12878	blood:	n/a	n/a
36	TAF1	chr6:31794464-31796026	H1-hESC	embryonic stem cell:	n/a	n/a
37	ZMIZ1	chr6:31794446-31795741	K562	blood:	n/a	n/a
38	SP4	chr6:31794618-31795694	H1-hESC	embryonic stem cell:	n/a	n/a
39	FOXA1	chr6:31794604-31795398	T-47D	breast:	n/a	chr6:31794849-31794864
40	POLR2A	chr6:31794558-31795788	HL-60	blood:	n/a	n/a
41	YY1	chr6:31794362-31795256	ECC-1	luminal epithelium:	n/a	n/a
42	EP300	chr6:31794329-31795819	ECC-1	luminal epithelium:	n/a	chr6:31794745-31794761
43	NFYB	chr6:31794693-31795684	K562	blood:	n/a	chr6:31795357-31795372 chr6:31795441-31795456 chr6:31795361-31795373 chr6:31795360-31795370 chr6:31795079-31795093 chr6:31795444-31795454 chr6:31795358-31795372 chr6:31795357-31795372 chr6:31795359-31795374 chr6:31795445-31795457 chr6:31795441-31795456
44	POLR2A	chr6:31794157-31797592	GM12892	blood:	n/a	n/a
45	SIN3AK20	chr6:31794550-31795805	PANC-1	pancreas:	n/a	n/a
46	SP1	chr6:31794484-31795859	A549	lung:	n/a	chr6:31795269-31795279 chr6:31795269-31795279 chr6:31795434-31795455 chr6:31794753-31794765 chr6:31795350-31795371 chr6:31795378-31795392 chr6:31794754-31794763 chr6:31794750-31794764
47	MXI1	chr6:31794960-31795760	HepG2	liver:	n/a	chr6:31795239-31795254
48	TCF12	chr6:31794435-31795834	ECC-1	luminal epithelium:	n/a	chr6:31795405-31795413 chr6:31794854-31794863 chr6:31794471-31794478
49	ELK1	chr6:31794807-31795128	GM12878	blood:	n/a	n/a
50	IRF3	chr6:31794880-31795582	GM12878	blood:	n/a	chr6:31794949-31794969

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31795008-31795058	SAEC	small airway:	n/a
2	chr6:31795008-31795058	AG04449	skin:	fetal
3	chr6:31795008-31795058	Caco-2	colon:	n/a
4	chr6:31795008-31795058	HRPEpiC	eye:	n/a
5	chr6:31795003-31795053	AoSMC	blood vessel:	n/a
6	chr6:31795008-31795058	SK-N-MC	brain:	n/a
7	chr6:31795003-31795053	HAEpiC	amniotic membrane:	n/a
8	chr6:31795003-31795053	RPTEC	kidney:	n/a
9	chr6:31795008-31795058	Hela-S3	cervix:	n/a
10	chr6:31795008-31795058	NT2-D1	testis:	n/a
11	chr6:31795003-31795053	SAEC	small airway:	n/a
12	chr6:31795008-31795058	HCT-116	colon:	n/a
13	chr6:31795003-31795053	GM06990	blood:	n/a
14	chr6:31795003-31795053	MCF10A-Er-Src	breast:	n/a
15	chr6:31795008-31795058	HL-60	blood:	n/a
16	chr6:31795003-31795053	BJ	skin:	n/a
17	chr6:31795008-31795058	HepG2	liver:	n/a
18	chr6:31795003-31795053	SK-N-SH	brain:	n/a
19	chr6:31795008-31795058	HUVEC	blood vessel:	n/a
20	chr6:31795003-31795053	AG09309	skin:	n/a
21	chr6:31795003-31795053	HCM	heart:	n/a
22	chr6:31795008-31795058	SK-N-SH_RA	brain:	n/a
23	chr6:31795008-31795058	RPTEC	kidney:	n/a
24	chr6:31795003-31795053	CMK	blood:	n/a
25	chr6:31795008-31795058	ovcar-3	ovarian:	n/a
26	chr6:31795003-31795053	HCPEpiC	choroid plexus:	n/a
27	chr6:31795003-31795053	GM12878	blood:	n/a
28	chr6:31795008-31795058	NB4	blood:	n/a
29	chr6:31795008-31795058	CMK	blood:	n/a
30	chr6:31795003-31795053	GM12891	blood:	n/a
31	chr6:31795003-31795053	PrEC	prostate:	n/a
32	chr6:31795003-31795053	K562	blood:	n/a
33	chr6:31795008-31795058	LNCaP	prostate:	n/a
34	chr6:31795003-31795053	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:31795003-31795053	HIPEpiC	eye:	n/a
36	chr6:31795003-31795053	AG04449	skin:	fetal
37	chr6:31795003-31795053	Caco-2	colon:	n/a
38	chr6:31795008-31795058	HCF	heart:	n/a
39	chr6:31795008-31795058	PFSK-1	brain:	n/a
40	chr6:31795008-31795058	HRCEpiC	kidney:	n/a
41	chr6:31795008-31795058	AG09309	skin:	n/a
42	chr6:31795008-31795058	HEK293	kidney:	embryo
43	chr6:31795008-31795058	HNPCEpiC	eye:	n/a
44	chr6:31795003-31795053	HRCEpiC	kidney:	n/a
45	chr6:31795003-31795053	SKMC	muscle:	n/a
46	chr6:31795008-31795058	GM12892	blood:	n/a
47	chr6:31795003-31795053	NB4	blood:	n/a
48	chr6:31795003-31795053	NH-A	brain:	n/a
49	chr6:31795003-31795053	NHBE	bronchial:	n/a
50	chr6:31795003-31795053	Hela-S3	cervix:	n/a

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31632509..31634091-chr6:31794981..31797016,2	MCF-7	breast:
2	chr6:31646374..31649912-chr6:31794618..31797680,6	MCF-7	breast:
3	chr6:31793170..31796834-chr6:31863715..31868848,6	K562	blood:
4	chr6:31794986..31795591-chr6:31830132..31830996,2	K562	blood:
5	chr6:31737226..31750413-chr6:31786206..31805473,50	MCF-7	breast:
6	chr6:31508088..31512302-chr6:31792582..31797881,5	K562	blood:
7	chr6:31794734..31796775-chr6:31868219..31871084,2	MCF-7	breast:
8	chr6:31508352..31511076-chr6:31794765..31796870,2	MCF-7	breast:
9	chr6:31684129..31686897-chr6:31793349..31796953,3	MCF-7	breast:
10	chr6:31794061..31796965-chr6:32094661..32097719,3	K562	blood:
11	chr6:31793612..31800139-chr6:31830250..31833240,9	K562	blood:
12	chr6:31793567..31795158-chr6:31866133..31867825,2	MCF-7	breast:
13	chr6:31794692..31795467-chr7:32996980..32997822,2	Hela-S3	cervix:
14	chr6:31610323..31613172-chr6:31793267..31795561,2	MCF-7	breast:
15	chr6:31782320..31783797-chr6:31794894..31795956,19	Hela-S3	cervix:
16	chr6:31794807..31796884-chr6:31844966..31847954,2	MCF-7	breast:
17	chr6:31794009..31796794-chr6:31937769..31941181,3	K562	blood:
18	chr6:31619174..31622035-chr6:31794476..31797735,3	MCF-7	breast:
19	chr6:31793907..31797035-chr6:31916814..31918857,3	K562	blood:
20	chr6:31743287..31747076-chr6:31793437..31796925,5	MCF-7	breast:
21	chr6:31508345..31511059-chr6:31794031..31797026,5	K562	blood:
22	chr6:31792517..31796452-chr6:31911867..31914768,3	MCF-7	breast:
23	chr6:31647892..31650324-chr6:31793249..31795639,4	MCF-7	breast:
24	chr6:31793241..31795291-chr6:31827897..31829868,2	K562	blood:
25	chr6:31793367..31797001-chr6:32936441..32941447,5	MCF-7	breast:
26	chr1:116518929..116519531-chr6:31794722..31795650,2	Hela-S3	cervix:
27	chr6:31737477..31739729-chr6:31793263..31795025,2	MCF-7	breast:
28	chr6:31698357..31701391-chr6:31793671..31797057,3	MCF-7	breast:
29	chr6:31705000..31705864-chr6:31794301..31795092,2	Hela-S3	cervix:
30	chr6:31782709..31783766-chr6:31794789..31796004,3	NB4	blood:
31	chr6:31793544..31795489-chr6:31833591..31835312,2	K562	blood:
32	chr6:31794817..31797801-chr6:31829779..31831981,3	K562	blood:
33	chr11:65274213..65274813-chr6:31794151..31795048,2	Hela-S3	cervix:
34	chr1:70820419..70821379-chr6:31794911..31795554,2	Hela-S3	cervix:
35	chr6:31792824..31795185-chr6:32163187..32165049,2	MCF-7	breast:
36	chr20:49347653..49348478-chr6:31794981..31795951,2	MCF-7	breast:
37	chr17:61850800..61851512-chr6:31794673..31795631,2	Hela-S3	cervix:
38	chr6:31782095..31783822-chr6:31794892..31795963,5	MCF-7	breast:
39	chr6:31793011..31795129-chr6:31906827..31908571,2	MCF-7	breast:
40	chr6:31794076..31797070-chr6:31910942..31912443,2	K562	blood:
41	chr6:31756951..31764627-chr6:31780500..31799197,32	MCF-7	breast:
42	chr6:31758502..31767561-chr6:31786193..31804196,52	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSPA1B-1	chr6:31794980-31795104	XLOC_005252

No data

Variant related genes	Relation type
HSPA1B	TF binding region
HSPA1B	CpG island
ENSG00000198231	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000108588	Chromatin interaction
ENSG00000197568	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000163393	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000201555	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204301	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204420	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000213676	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000122642	Chromatin interaction
ENSG00000198563	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
10	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
11	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
13	nsv884426	chr6:31728102-31800868	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv884427	chr6:31728102-31802465	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
15	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
16	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
17	nsv884430	chr6:31731881-31800631	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
18	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
19	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
20	nsv981359	chr6:31779004-31797103	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
21	nsv869989	chr6:31779203-31797657	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	114 gene(s)	inside rSNPs	diseases
22	nsv601946	chr6:31782617-31795082	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
23	esv3344240	chr6:31783339-31795664	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
24	nsv823504	chr6:31783490-31795322	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
25	nsv884449	chr6:31783527-31795082	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
26	nsv884450	chr6:31783527-31797769	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
27	nsv884451	chr6:31783527-31800631	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
28	esv3349739	chr6:31785205-31796114	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
29	nsv884453	chr6:31785228-31795370	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
30	esv2421830	chr6:31785228-31797422	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
31	nsv601947	chr6:31785228-31797422	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
32	nsv884454	chr6:31785228-31797422	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
33	nsv884455	chr6:31785228-31797422	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
34	nsv884456	chr6:31785228-31800631	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
35	nsv884457	chr6:31785228-31803130	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
36	nsv601949	chr6:31785438-31795082	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
37	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
38	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
39	nsv884458	chr6:31785453-31795082	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
40	nsv601953	chr6:31785453-31795140	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
41	nsv601954	chr6:31785453-31795345	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
42	nsv884459	chr6:31785453-31795370	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
43	nsv884460	chr6:31785453-31797422	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
44	nsv884461	chr6:31785453-31827045	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
45	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
46	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
47	nsv884462	chr6:31785792-31797422	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
48	nsv601958	chr6:31787630-31795082	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
49	nsv462874	chr6:31794592-31864304	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
50	nsv601959	chr6:31794592-31864304	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31791200-31795400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:31794200-31795400	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr6:31794200-31795400	Flanking Active TSS	Dnd41	blood
4	chr6:31794200-31795800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:31794200-31795800	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:31794200-31795800	Active TSS	Gastric	stomach
7	chr6:31794200-31795800	Active TSS	Right Ventricle	heart
8	chr6:31794200-31796000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:31794200-31796000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:31794400-31795200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr6:31794400-31795200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr6:31794400-31795200	Flanking Active TSS	Fetal Brain Female	brain
13	chr6:31794400-31795600	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr6:31794400-31795800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:31794400-31795800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:31794400-31795800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:31794400-31795800	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr6:31794400-31795800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr6:31794400-31795800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr6:31794400-31795800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:31794400-31795800	Active TSS	Colon Smooth Muscle	Colon
22	chr6:31794400-31795800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:31794400-31795800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
24	chr6:31794400-31795800	Active TSS	Ovary	ovary
25	chr6:31794400-31795800	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chr6:31794400-31796000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:31794400-31796000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr6:31794400-31796000	Active TSS	Esophagus	oesophagus
29	chr6:31794600-31795200	Weak transcription	Spleen	Spleen
30	chr6:31794600-31795400	Active TSS	Right Atrium	heart
31	chr6:31794600-31795800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:31794600-31795800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:31794600-31795800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:31794600-31795800	Active TSS	Liver	Liver
35	chr6:31794600-31795800	Active TSS	Brain Substantia Nigra	brain
36	chr6:31794600-31795800	Active TSS	Duodenum Mucosa	Duodenum
37	chr6:31794600-31795800	Active TSS	Lung	lung
38	chr6:31794600-31795800	Active TSS	Psoas Muscle	Psoas
39	chr6:31794600-31795800	Active TSS	Small Intestine	intestine
40	chr6:31794600-31795800	Active TSS	A549	lung
41	chr6:31794600-31795800	Active TSS	NHDF-Ad	bronchial
42	chr6:31794600-31796000	Active TSS	H1 Cell Line	embryonic stem cell
43	chr6:31794600-31796000	Active TSS	HUES64 Cell Line	embryonic stem cell
44	chr6:31794600-31796000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:31794600-31796000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:31794600-31796000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:31794600-31796000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:31794600-31796000	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr6:31794600-31796000	Active TSS	Fetal Intestine Large	intestine
50	chr6:31794600-31796000	Active TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links