Variant report

Variant	nsv601958
Chromosome Location	chr6:31787630-31795082
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1018)
CpG islands
(count:1221)
Chromatin interactive
region (count:70)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1018 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:31789559-31790328	K562	blood:	n/a	n/a
2	ARID3A	chr6:31789668-31790448	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:31792459-31792558	K562	blood:	n/a	n/a
4	ARID3A	chr6:31794588-31795662	K562	blood:	n/a	n/a
5	ARID3A	chr6:31787245-31788114	HepG2	liver:	n/a	n/a
6	ATF1	chr6:31794660-31795686	K562	blood:	n/a	n/a
7	ATF2	chr6:31794358-31795746	GM12878	blood:	n/a	n/a
8	ATF2	chr6:31794649-31795145	GM12878	blood:	n/a	n/a
9	ATF3	chr6:31789859-31790365	K562	blood:	n/a	n/a
10	BACH1	chr6:31792397-31792520	K562	blood:	n/a	n/a
11	BACH1	chr6:31789443-31790451	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr6:31794329-31795014	K562	blood:	n/a	n/a
13	BACH1	chr6:31789468-31790673	K562	blood:	n/a	n/a
14	BATF	chr6:31790913-31791165	GM12878	blood:	n/a	n/a
15	BATF	chr6:31794235-31794456	GM12878	blood:	n/a	n/a
16	BATF	chr6:31790913-31791206	GM12878	blood:	n/a	n/a
17	BCL3	chr6:31789904-31790513	A549	lung:	n/a	n/a
18	BCL3	chr6:31789851-31790455	A549	lung:	n/a	n/a
19	BCLAF1	chr6:31789863-31790333	GM12878	blood:	n/a	n/a
20	BCLAF1	chr6:31789404-31789831	GM12878	blood:	n/a	n/a
21	BCLAF1	chr6:31794567-31795101	GM12878	blood:	n/a	n/a
22	BCLAF1	chr6:31789438-31789842	GM12878	blood:	n/a	n/a
23	BHLHE40	chr6:31790847-31790948	K562	blood:	n/a	n/a
24	BHLHE40	chr6:31790049-31790304	HepG2	liver:	n/a	n/a
25	BHLHE40	chr6:31794646-31795591	GM12878	blood:	n/a	n/a
26	BHLHE40	chr6:31788984-31790556	K562	blood:	n/a	chr6:31789607-31789623
27	BHLHE40	chr6:31794492-31795740	K562	blood:	n/a	chr6:31795606-31795622
28	BRCA1	chr6:31794476-31794642	GM12878	blood:	n/a	n/a
29	BRCA1	chr6:31788950-31789241	Hela-S3	cervix:	n/a	n/a
30	BRCA1	chr6:31794502-31795713	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr6:31789588-31789670	GM12878	blood:	n/a	n/a
32	BRCA1	chr6:31789477-31790691	Hela-S3	cervix:	n/a	n/a
33	CBX3	chr6:31794192-31798316	K562	blood:	n/a	chr6:31794873-31794884
34	CBX3	chr6:31794747-31796481	K562	blood:	n/a	chr6:31794873-31794884
35	CBX3	chr6:31789864-31790455	K562	blood:	n/a	n/a
36	CBX3	chr6:31788931-31791266	K562	blood:	n/a	n/a
37	CCNT2	chr6:31794332-31795902	K562	blood:	n/a	n/a
38	CCNT2	chr6:31789022-31790342	K562	blood:	n/a	n/a
39	CCNT2	chr6:31787861-31788115	K562	blood:	n/a	n/a
40	CCNT2	chr6:31788539-31788679	K562	blood:	n/a	n/a
41	CEBPB	chr6:31786588-31787665	Hela-S3	cervix:	n/a	chr6:31787462-31787473 chr6:31787631-31787639
42	CEBPB	chr6:31794645-31795722	K562	blood:	n/a	chr6:31795445-31795453
43	CEBPB	chr6:31789045-31789592	K562	blood:	n/a	chr6:31789325-31789336
44	CEBPB	chr6:31789181-31789451	A549	lung:	n/a	chr6:31789325-31789336
45	CEBPB	chr6:31787308-31787664	HepG2	liver:	n/a	chr6:31787462-31787473 chr6:31787631-31787639
46	CEBPB	chr6:31789932-31790382	MCF-7	breast:	n/a	n/a
47	CEBPB	chr6:31788971-31789668	H1-hESC	embryonic stem cell:	n/a	chr6:31789325-31789336
48	CEBPB	chr6:31794571-31795722	Hela-S3	cervix:	n/a	chr6:31795445-31795453
49	CEBPB	chr6:31790029-31790324	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr6:31790077-31790347	K562	blood:	n/a	n/a

(count:1221 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31789161-31789211	Caco-2	colon:	n/a
2	chr6:31789161-31789211	Caco-2	colon:	n/a
3	chr6:31795003-31795053	HRCEpiC	kidney:	n/a
4	chr6:31789846-31789896	ProgFib	skin:	n/a
5	chr6:31795003-31795053	T-47D	breast:	n/a
6	chr6:31790106-31790156	HCPEpiC	choroid plexus:	n/a
7	chr6:31790054-31790104	SKMC	muscle:	n/a
8	chr6:31790102-31790152	GM19239	blood:	n/a
9	chr6:31789161-31789211	Hepatocyte	liver:	n/a
10	chr6:31790054-31790104	HEK293	kidney:	embryo
11	chr6:31795008-31795058	NHDF-neo	bronchial:	n/a
12	chr6:31790102-31790152	HRE	kidney:	n/a
13	chr6:31795008-31795058	Jurkat	blood:	n/a
14	chr6:31790694-31790744	HUVEC	blood vessel:	n/a
15	chr6:31789535-31789585	Hela-S3	cervix:	n/a
16	chr6:31794278-31794328	A549	lung:	n/a
17	chr6:31789941-31789991	HEK293	kidney:	embryo
18	chr6:31790694-31790744	PFSK-1	brain:	n/a
19	chr6:31795065-31795115	AG04450	lung:	fetal
20	chr6:31794759-31794809	CMK	blood:	n/a
21	chr6:31789846-31789896	RPTEC	kidney:	n/a
22	chr6:31795041-31795091	ovcar-3	ovarian:	n/a
23	chr6:31789985-31790035	K562	blood:	n/a
24	chr6:31795041-31795091	HEEpiC	esophagus:	n/a
25	chr6:31789846-31789896	NB4	blood:	n/a
26	chr6:31789846-31789896	NT2-D1	testis:	n/a
27	chr6:31794278-31794328	GM06990	blood:	n/a
28	chr6:31794519-31794569	LNCaP	prostate:	n/a
29	chr6:31794278-31794328	PFSK-1	brain:	n/a
30	chr6:31790102-31790152	K562	blood:	n/a
31	chr6:31789540-31789590	T-47D	breast:	n/a
32	chr6:31794759-31794809	AG09309	skin:	n/a
33	chr6:31794759-31794809	Hepatocyte	liver:	n/a
34	chr6:31794302-31794352	ovcar-3	ovarian:	n/a
35	chr6:31789985-31790035	ovcar-3	ovarian:	n/a
36	chr6:31794519-31794569	PANC-1	pancreas:	n/a
37	chr6:31794278-31794328	HCM	heart:	n/a
38	chr6:31790102-31790152	Jurkat	blood:	n/a
39	chr6:31790106-31790156	HAEpiC	amniotic membrane:	n/a
40	chr6:31794759-31794809	SKMC	muscle:	n/a
41	chr6:31794472-31794522	T-47D	breast:	n/a
42	chr6:31795008-31795058	SK-N-SH	brain:	n/a
43	chr6:31790102-31790152	BJ	skin:	n/a
44	chr6:31794278-31794328	Jurkat	blood:	n/a
45	chr6:31794472-31794522	HIPEpiC	eye:	n/a
46	chr6:31789941-31789991	PFSK-1	brain:	n/a
47	chr6:31789161-31789211	SK-N-SH	brain:	n/a
48	chr6:31789535-31789585	SKMC	muscle:	n/a
49	chr6:31790102-31790152	HAEpiC	amniotic membrane:	n/a
50	chr6:31795041-31795091	HPAEpiC	pulmonary alveolar:	n/a

(count:70 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:31763403..31763965-chr6:31788592..31790010,3	MCF-7	breast:
2	chr10:38146501..38147130-chr6:31795044..31795963,2	Hela-S3	cervix:
3	chr6:31758502..31767561-chr6:31786193..31804196,52	MCF-7	breast:
4	chr6:31508345..31511059-chr6:31794031..31797026,5	K562	blood:
5	chr6:31793367..31797001-chr6:32936441..32941447,5	MCF-7	breast:
6	chr6:31794009..31796794-chr6:31937769..31941181,3	K562	blood:
7	chr6:31784980..31787962-chr6:31864437..31865939,2	K562	blood:
8	chr16:87425636..87426576-chr6:31795079..31795938,2	Hela-S3	cervix:
9	chr6:31782095..31783822-chr6:31794892..31795963,5	MCF-7	breast:
10	chr6:31647892..31650324-chr6:31793249..31795639,4	MCF-7	breast:
11	chr6:31794986..31795591-chr6:31830132..31830996,2	K562	blood:
12	chr1:116518929..116519531-chr6:31794722..31795650,2	Hela-S3	cervix:
13	chr15:71405490..71408183-chr6:31789588..31791762,2	MCF-7	breast:
14	chr6:31795039..31796009-chr6:33175540..33176385,2	Hela-S3	cervix:
15	chr6:31684129..31686897-chr6:31793349..31796953,3	MCF-7	breast:
16	chr6:31794734..31796775-chr6:31868219..31871084,2	MCF-7	breast:
17	chr6:31756951..31764627-chr6:31780500..31799197,32	MCF-7	breast:
18	chr6:31793612..31800139-chr6:31830250..31833240,9	K562	blood:
19	chr17:61850800..61851512-chr6:31794673..31795631,2	Hela-S3	cervix:
20	chr6:31632509..31634091-chr6:31794981..31797016,2	MCF-7	breast:
21	chr5:111496508..111497358-chr6:31795058..31795974,2	NB4	blood:
22	chr6:31793170..31796834-chr6:31863715..31868848,6	K562	blood:
23	chr6:31792517..31796452-chr6:31911867..31914768,3	MCF-7	breast:
24	chr6:31790007..31791518-chr6:32120895..32123517,2	K562	blood:
25	chr6:31786252..31788275-chr6:31863688..31865809,2	MCF-7	breast:
26	chr6:31631646..31633919-chr6:31787959..31790422,2	MCF-7	breast:
27	chr20:62258238..62258948-chr6:31794298..31794800,2	Hela-S3	cervix:
28	chr17:48943397..48944087-chr6:31789590..31790243,2	HCT-116	colon:
29	chr11:65274213..65274813-chr6:31794151..31795048,2	Hela-S3	cervix:
30	chr6:31791813..31794376-chr6:32937568..32939757,2	MCF-7	breast:
31	chr6:31788461..31791125-chr6:31825621..31827331,2	K562	blood:
32	chr6:31786539..31789498-chr6:31865115..31867548,2	MCF-7	breast:
33	chr6:31743287..31747076-chr6:31793437..31796925,5	MCF-7	breast:
34	chr6:31587891..31592160-chr6:31793153..31794760,3	MCF-7	breast:
35	chr6:31696500..31699406-chr6:31787400..31790891,3	MCF-7	breast:
36	chr6:31789611..31791265-chr6:31928523..31930775,2	MCF-7	breast:
37	chr17:56708850..56710382-chr6:31791349..31793381,2	MCF-7	breast:
38	chr6:31788795..31791461-chr6:31833499..31835770,2	K562	blood:
39	chr15:30113789..30114693-chr6:31795054..31795835,2	Hela-S3	cervix:
40	chr6:31646374..31649912-chr6:31794618..31797680,6	MCF-7	breast:
41	chr1:70820419..70821379-chr6:31794911..31795554,2	Hela-S3	cervix:
42	chr6:31782709..31783766-chr6:31794789..31796004,3	NB4	blood:
43	chr6:31508155..31511005-chr6:31784810..31787723,2	K562	blood:
44	chr6:31619174..31622035-chr6:31794476..31797735,3	MCF-7	breast:
45	chr6:31764794..31767222-chr6:31789462..31791730,2	MCF-7	breast:
46	chr6:31794807..31796884-chr6:31844966..31847954,2	MCF-7	breast:
47	chr6:31794817..31797801-chr6:31829779..31831981,3	K562	blood:
48	chr6:31698357..31701391-chr6:31793671..31797057,3	MCF-7	breast:
49	chr6:31794061..31796965-chr6:32094661..32097719,3	K562	blood:
50	chr6:31705000..31705864-chr6:31794301..31795092,2	Hela-S3	cervix:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSPA1B-1	chr6:31789991-31790078	XLOC_005252
2	lnc-HSPA1B-1	chr6:31794980-31795104	XLOC_005252

No data

Variant related genes	Relation type
HSPA1L	TF binding region
HSPA1B	TF binding region
HSPA1L	CpG island
HSPA1B	CpG island
ENSG00000223837	chromatin interactions
ENSG00000204463	chromatin interactions
ENSG00000263020	chromatin interactions
ENSG00000213654	chromatin interactions
ENSG00000204390	chromatin interactions
ENSG00000108588	chromatin interactions
ENSG00000234006	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000204227	chromatin interactions
ENSG00000199036	chromatin interactions
ENSG00000204366	chromatin interactions
ENSG00000103264	chromatin interactions
ENSG00000232442	chromatin interactions
ENSG00000201555	chromatin interactions
ENSG00000204257	chromatin interactions
ENSG00000204394	chromatin interactions
ENSG00000229980	chromatin interactions
ENSG00000204396	chromatin interactions
ENSG00000141232	chromatin interactions
ENSG00000204673	chromatin interactions
ENSG00000263756	chromatin interactions
ENSG00000258388	chromatin interactions
ENSG00000204420	chromatin interactions
ENSG00000101216	chromatin interactions
ENSG00000204469	chromatin interactions
ENSG00000224032	chromatin interactions
ENSG00000204301	chromatin interactions
ENSG00000200816	chromatin interactions
ENSG00000166278	chromatin interactions
ENSG00000104067	chromatin interactions
ENSG00000236514	chromatin interactions
ENSG00000204256	chromatin interactions
ENSG00000204389	chromatin interactions
ENSG00000204348	chromatin interactions
ENSG00000265236	chromatin interactions
ENSG00000197568	chromatin interactions
ENSG00000198105	chromatin interactions
ENSG00000225362	chromatin interactions
ENSG00000204351	chromatin interactions
ENSG00000213719	chromatin interactions
ENSG00000140941	chromatin interactions
ENSG00000122642	chromatin interactions
ENSG00000204428	chromatin interactions
ENSG00000204386	chromatin interactions
ENSG00000243649	chromatin interactions
ENSG00000204385	chromatin interactions
ENSG00000204371	chromatin interactions
ENSG00000204435	chromatin interactions
ENSG00000204444	chromatin interactions
ENSG00000198231	chromatin interactions
ENSG00000213722	chromatin interactions
ENSG00000124171	chromatin interactions
ENSG00000213676	chromatin interactions
ENSG00000204314	chromatin interactions
ENSG00000204344	chromatin interactions
ENSG00000238363	chromatin interactions
ENSG00000221988	chromatin interactions
ENSG00000163393	chromatin interactions
ENSG00000198563	chromatin interactions
ENSG00000204438	chromatin interactions

Extended variants
information (count: 224 )
Associated
traits (count: 131 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs55660302	chr6:31787630-31787631	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
2	rs191030427	chr6:31787647-31787648	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
3	rs142793531	chr6:31787699-31787700	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
4	rs530474226	chr6:31787749-31787750	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
5	rs548475811	chr6:31787814-31787815	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
6	rs542643955	chr6:31787853-31787854	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
7	rs569951209	chr6:31787896-31787897	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
8	rs182131726	chr6:31787909-31787910	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
9	rs185165843	chr6:31787927-31787928	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
10	rs558002469	chr6:31787966-31787967	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
11	rs77488547	chr6:31788015-31788016	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
12	rs9469058	chr6:31788050-31788051	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs115641235	chr6:31788075-31788076	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
14	rs147439956	chr6:31788126-31788127	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
15	rs138213910	chr6:31788137-31788138	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
16	rs141771217	chr6:31788152-31788153	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
17	rs576269877	chr6:31788155-31788156	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
18	rs543661860	chr6:31788159-31788160	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
19	rs559042697	chr6:31788192-31788193	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
20	rs577422811	chr6:31788200-31788201	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
21	rs368518645	chr6:31788235-31788236	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
22	rs191044821	chr6:31788304-31788305	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
23	rs573845748	chr6:31788348-31788349	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
24	rs376997206	chr6:31788354-31788355	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
25	rs559726985	chr6:31788360-31788361	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
26	rs544230355	chr6:31788381-31788382	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
27	rs530314715	chr6:31788426-31788427	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
28	rs35746329	chr6:31788433-31788434	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
29	rs61291296	chr6:31788450-31788451	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
30	rs62395828	chr6:31788479-31788480	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs577340630	chr6:31788500-31788501	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
32	rs62395829	chr6:31788531-31788532	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
33	rs139669454	chr6:31788576-31788577	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
34	rs530963937	chr6:31788600-31788601	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
35	rs564348560	chr6:31788609-31788610	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
36	rs552364003	chr6:31788654-31788655	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
37	rs571002383	chr6:31788811-31788812	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
38	rs55914912	chr6:31788837-31788838	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
39	rs556528396	chr6:31788838-31788839	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
40	rs532280871	chr6:31788851-31788852	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
41	rs547055469	chr6:31788911-31788912	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
42	rs183307409	chr6:31788915-31788916	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
43	rs535883826	chr6:31788987-31788988	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
44	rs554874228	chr6:31789090-31789091	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
45	rs569966260	chr6:31789103-31789104	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
46	rs149387239	chr6:31789118-31789119	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
47	rs369757133	chr6:31789150-31789151	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
48	rs558826392	chr6:31789177-31789178	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
49	rs116769883	chr6:31789205-31789206	Active TSS Flanking Active TSS Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
50	rs541549804	chr6:31789228-31789229	Active TSS Flanking Active TSS Enhancers	Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:131)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ovarian cancer	21781307	CNVD
Ependymoma	19289631	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Breast cancer	21364760	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1129 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31783600-31789000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:31785000-31787800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr6:31785000-31787800	Active TSS	Brain Germinal Matrix	brain
4	chr6:31785200-31787800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:31785200-31788000	Transcr. at gene 5' and 3'	K562	blood
6	chr6:31785400-31789800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr6:31785600-31787800	Weak transcription	Dnd41	blood
8	chr6:31785800-31788600	Flanking Active TSS	HepG2	liver
9	chr6:31785800-31789000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:31786000-31789000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:31786000-31789000	Enhancers	Fetal Intestine Small	intestine
12	chr6:31786200-31789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:31786200-31789000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:31786200-31789000	Enhancers	Fetal Intestine Large	intestine
15	chr6:31786400-31787800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:31786400-31787800	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:31786400-31787800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:31786400-31788400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:31786400-31788800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:31786400-31788800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:31786400-31788800	Weak transcription	Small Intestine	intestine
22	chr6:31786400-31789000	Weak transcription	Fetal Brain Male	brain
23	chr6:31786400-31789000	Weak transcription	Fetal Brain Female	brain
24	chr6:31786400-31789000	Weak transcription	Fetal Lung	lung
25	chr6:31786400-31789000	Weak transcription	HSMM	muscle
26	chr6:31786400-31789200	Enhancers	Spleen	Spleen
27	chr6:31786600-31788000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr6:31786600-31788000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:31786600-31788200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:31786600-31788800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:31786600-31788800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:31786600-31788800	Weak transcription	Fetal Kidney	kidney
33	chr6:31786600-31789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:31786600-31789000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:31786600-31789000	Weak transcription	Primary T cells from cord blood	blood
36	chr6:31786600-31789000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:31786600-31789000	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr6:31786600-31789000	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:31786600-31789000	Enhancers	Fetal Muscle Leg	muscle
40	chr6:31786600-31789000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:31786600-31789000	Weak transcription	HSMMtube	muscle
42	chr6:31786600-31789000	Weak transcription	NH-A	brain
43	chr6:31786600-31789200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:31786600-31789400	Enhancers	Stomach Mucosa	stomach
45	chr6:31786600-31790200	Active TSS	Brain Anterior Caudate	brain
46	chr6:31786800-31787800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:31786800-31787800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:31786800-31787800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:31786800-31788000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:31786800-31788000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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