Variant report

Variant	rs9469058
Chromosome Location	chr6:31788050-31788051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:31787290-31788054	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:31787256-31788183	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:31787245-31788114	HepG2	liver:	n/a	n/a
4	MYBL2	chr6:31787190-31788191	HepG2	liver:	n/a	n/a
5	FOXA2	chr6:31787298-31788133	HepG2	liver:	n/a	n/a
6	MBD4	chr6:31787255-31788101	HepG2	liver:	n/a	n/a
7	NFIC	chr6:31787248-31788081	HepG2	liver:	n/a	n/a
8	FOXA2	chr6:31787779-31788265	A549	lung:	n/a	n/a
9	CCNT2	chr6:31787861-31788115	K562	blood:	n/a	n/a
10	KAP1	chr6:31787401-31788143	HEK293	kidney:	n/a	n/a
11	FOXA2	chr6:31787818-31788221	A549	lung:	n/a	n/a
12	POLR2A	chr6:31787877-31788158	K562	blood:	n/a	n/a
13	FOXA1	chr6:31787883-31788093	T-47D	breast:	n/a	n/a
14	FOXA1	chr6:31787887-31788161	T-47D	breast:	n/a	n/a
15	TEAD4	chr6:31787201-31788076	HepG2	liver:	n/a	n/a
16	POLR2A	chr6:31787286-31788126	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr6:31787653-31788123	PANC-1	pancreas:	n/a	n/a
18	FOXA1	chr6:31787730-31788120	HepG2	liver:	n/a	n/a
19	FOXA1	chr6:31787282-31788246	HepG2	liver:	n/a	n/a
20	SP1	chr6:31787227-31788109	HepG2	liver:	n/a	n/a
21	POLR2A	chr6:31787205-31788072	MCF10A-Er-Src	breast:	n/a	n/a
22	FOXA1	chr6:31787206-31788234	HepG2	liver:	n/a	n/a
23	KAP1	chr6:31787580-31788138	U2OS	brain:	n/a	n/a
24	PML	chr6:31785124-31788166	K562	blood:	n/a	n/a
25	POLR2A	chr6:31785221-31788072	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31696500..31699406-chr6:31787400..31790891,3	MCF-7	breast:
2	chr6:31737226..31750413-chr6:31786206..31805473,50	MCF-7	breast:
3	chr6:31631646..31633919-chr6:31787959..31790422,2	MCF-7	breast:
4	chr6:31786641..31791881-chr6:31828297..31832567,10	K562	blood:
5	chr6:31786252..31788275-chr6:31863688..31865809,2	MCF-7	breast:
6	chr6:31756951..31764627-chr6:31780500..31799197,32	MCF-7	breast:
7	chr6:31786539..31789498-chr6:31865115..31867548,2	MCF-7	breast:
8	chr6:31758502..31767561-chr6:31786193..31804196,52	MCF-7	breast:

No data

Variant related genes	Relation type
HSPA1L	TF binding region
ENSG00000204371	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000201555	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000166278	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17201192	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17201403	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35595439	1.00[ASN][1000 genomes]
rs41273248	1.00[ASN][1000 genomes]
rs45484591	1.00[ASN][1000 genomes]
rs55932544	1.00[ASN][1000 genomes]
rs56061694	1.00[ASN][1000 genomes]
rs56103300	1.00[ASN][1000 genomes]
rs56119517	1.00[ASN][1000 genomes]
rs56127727	1.00[ASN][1000 genomes]
rs56188416	1.00[ASN][1000 genomes]
rs56192194	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56229298	1.00[ASN][1000 genomes]
rs58556649	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61740977	1.00[ASN][1000 genomes]
rs915653	1.00[ASN][1000 genomes]
rs9332704	1.00[ASN][1000 genomes]
rs9461728	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469054	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469068	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9501158	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9501159	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9501160	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
10	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
11	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
12	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
13	nsv884426	chr6:31728102-31800868	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
14	nsv884427	chr6:31728102-31802465	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
15	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
16	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
17	nsv884430	chr6:31731881-31800631	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
18	nsv462872	chr6:31778272-31864304	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
19	nsv601945	chr6:31778272-31864304	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
20	nsv981359	chr6:31779004-31797103	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	111 gene(s)	inside rSNPs	diseases
21	nsv869989	chr6:31779203-31797657	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	114 gene(s)	inside rSNPs	diseases
22	nsv601946	chr6:31782617-31795082	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	85 gene(s)	inside rSNPs	diseases
23	esv3344240	chr6:31783339-31795664	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
24	nsv823504	chr6:31783490-31795322	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
25	nsv884448	chr6:31783527-31794592	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
26	nsv884449	chr6:31783527-31795082	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
27	nsv884450	chr6:31783527-31797769	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
28	nsv884451	chr6:31783527-31800631	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
29	esv3349739	chr6:31785205-31796114	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
30	nsv884452	chr6:31785228-31794592	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
31	nsv884453	chr6:31785228-31795370	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
32	esv2421830	chr6:31785228-31797422	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
33	nsv601947	chr6:31785228-31797422	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
34	nsv884454	chr6:31785228-31797422	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
35	nsv884455	chr6:31785228-31797422	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
36	nsv884456	chr6:31785228-31800631	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
37	nsv884457	chr6:31785228-31803130	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
38	nsv601948	chr6:31785438-31794963	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
39	nsv601949	chr6:31785438-31795082	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
40	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
41	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
42	nsv601952	chr6:31785453-31794592	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
43	nsv884458	chr6:31785453-31795082	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
44	nsv601953	chr6:31785453-31795140	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
45	nsv601954	chr6:31785453-31795345	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
46	nsv884459	chr6:31785453-31795370	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
47	nsv884460	chr6:31785453-31797422	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
48	nsv884461	chr6:31785453-31827045	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
49	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
50	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31783600-31789000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:31785400-31789800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:31785800-31788600	Flanking Active TSS	HepG2	liver
4	chr6:31785800-31789000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:31786000-31789000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:31786000-31789000	Enhancers	Fetal Intestine Small	intestine
7	chr6:31786200-31789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:31786200-31789000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:31786200-31789000	Enhancers	Fetal Intestine Large	intestine
10	chr6:31786400-31788400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:31786400-31788800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:31786400-31788800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:31786400-31788800	Weak transcription	Small Intestine	intestine
14	chr6:31786400-31789000	Weak transcription	Fetal Brain Male	brain
15	chr6:31786400-31789000	Weak transcription	Fetal Brain Female	brain
16	chr6:31786400-31789000	Weak transcription	Fetal Lung	lung
17	chr6:31786400-31789000	Weak transcription	HSMM	muscle
18	chr6:31786400-31789200	Enhancers	Spleen	Spleen
19	chr6:31786600-31788200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr6:31786600-31788800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:31786600-31788800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:31786600-31788800	Weak transcription	Fetal Kidney	kidney
23	chr6:31786600-31789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:31786600-31789000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:31786600-31789000	Weak transcription	Primary T cells from cord blood	blood
26	chr6:31786600-31789000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:31786600-31789000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr6:31786600-31789000	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:31786600-31789000	Enhancers	Fetal Muscle Leg	muscle
30	chr6:31786600-31789000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:31786600-31789000	Weak transcription	HSMMtube	muscle
32	chr6:31786600-31789000	Weak transcription	NH-A	brain
33	chr6:31786600-31789200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:31786600-31789400	Enhancers	Stomach Mucosa	stomach
35	chr6:31786600-31790200	Active TSS	Brain Anterior Caudate	brain
36	chr6:31786800-31788400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr6:31786800-31788400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:31786800-31788400	Enhancers	NHDF-Ad	bronchial
39	chr6:31786800-31788600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:31786800-31788600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:31786800-31788600	Weak transcription	Aorta	Aorta
42	chr6:31786800-31788600	Weak transcription	GM12878-XiMat	blood
43	chr6:31786800-31788800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:31786800-31788800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:31786800-31788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:31786800-31788800	Enhancers	Colon Smooth Muscle	Colon
47	chr6:31786800-31788800	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:31786800-31788800	Weak transcription	HUVEC	blood vessel
49	chr6:31786800-31789000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:31786800-31789000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links