Variant report

Variant rs555997503
Chromosome Location chr5:180252804-180252805
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180238800-180253200 Weak transcription A549 lung
2 chr5:180244600-180256800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
3 chr5:180244600-180256800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr5:180245000-180256800 Weak transcription Spleen Spleen
5 chr5:180247600-180253000 Weak transcription Fetal Intestine Large intestine
6 chr5:180248000-180256600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr5:180248200-180256600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr5:180248600-180256000 Weak transcription Primary B cells from cord blood blood
9 chr5:180248600-180256000 Weak transcription Primary hematopoietic stem cells blood
10 chr5:180248800-180256200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr5:180248800-180256800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr5:180249000-180256400 Weak transcription Primary B cells from peripheral blood blood
13 chr5:180249000-180257600 Weak transcription Ovary ovary
14 chr5:180249200-180256600 Weak transcription GM12878-XiMat blood
15 chr5:180250400-180253400 Enhancers Right Atrium heart
16 chr5:180250400-180253400 Enhancers Skeletal Muscle Male skeletal muscle
17 chr5:180250400-180253600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:180250400-180253600 Enhancers Fetal Muscle Leg muscle
19 chr5:180250400-180253800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr5:180250400-180253800 Enhancers Adipose Nuclei Adipose
21 chr5:180250400-180253800 Enhancers Skeletal Muscle Female skeletal muscle
22 chr5:180250400-180254400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr5:180250400-180254600 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr5:180250600-180253600 Enhancers Rectal Mucosa Donor 31 rectum
25 chr5:180250600-180254200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr5:180250600-180254200 Enhancers HSMMtube muscle
27 chr5:180250800-180253800 Enhancers NHDF-Ad bronchial
28 chr5:180250800-180256600 Weak transcription K562 blood
29 chr5:180251000-180253200 Enhancers Primary T cells from cord blood blood
30 chr5:180251000-180253400 Enhancers HSMM muscle
31 chr5:180251000-180253600 Enhancers Colon Smooth Muscle Colon
32 chr5:180251200-180253200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr5:180251400-180256400 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr5:180251600-180253000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
35 chr5:180251600-180253400 Enhancers Brain Cingulate Gyrus brain
36 chr5:180251600-180254200 Enhancers NHEK skin
37 chr5:180251600-180254600 Enhancers Pancreas Pancrea
38 chr5:180251800-180253000 Enhancers Brain Anterior Caudate brain
39 chr5:180251800-180253200 Enhancers Left Ventricle heart
40 chr5:180251800-180253400 Enhancers Brain Hippocampus Middle brain
41 chr5:180251800-180253600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr5:180251800-180253600 Enhancers Brain Inferior Temporal Lobe brain
43 chr5:180251800-180253800 Enhancers Muscle Satellite Cultured Cells --
44 chr5:180251800-180253800 Enhancers Duodenum Mucosa Duodenum
45 chr5:180251800-180254000 Enhancers Brain Substantia Nigra brain
46 chr5:180251800-180254200 Enhancers HepG2 liver
47 chr5:180251800-180254200 Enhancers HMEC breast
48 chr5:180251800-180254400 Enhancers Stomach Mucosa stomach
49 chr5:180252000-180253000 Weak transcription HUVEC blood vessel
50 chr5:180252000-180253200 Enhancers Stomach Smooth Muscle stomach

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