Variant report

Variant	rs556063275
Chromosome Location	chr3:112027560-112027561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv967052	chr3:112020436-112027937	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv3336356	chr3:112027218-112031669	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112024000-112028800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:112025200-112034600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:112026200-112027600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:112026400-112027600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:112026400-112027600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:112026400-112027600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:112026600-112028400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:112026800-112027600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:112027000-112027600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:112027000-112027600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:112027000-112027600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:112027000-112027600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:112027000-112027600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:112027000-112028000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:112027200-112027600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:112027400-112028600	Weak transcription	Placenta	Placenta
17	chr3:112027400-112029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:112027400-112031400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:112027400-112032800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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