Variant report

Variant	rs556073666
Chromosome Location	chr10:6018801-6018802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
2	chr10:5931810..5933817-chr10:6018457..6020176,2	MCF-7	breast:
3	chr10:5853517..5856397-chr10:6017987..6020051,2	MCF-7	breast:
4	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
5	chr10:5987354..5989797-chr10:6018047..6020538,2	MCF-7	breast:
6	chr10:6003571..6011080-chr10:6014794..6021269,11	K562	blood:
7	chr10:6018064..6019912-chr10:6129955..6132156,2	K562	blood:
8	chr10:6018278..6019533-chr10:6130531..6131243,3	MCF-7	breast:
9	chr10:5929157..5931311-chr10:6018059..6019673,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134453	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000057608	Chromatin interaction
ENSG00000232807	Chromatin interaction
ENSG00000134461	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv894810	chr10:6015595-6023466	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv894811	chr10:6016399-6022562	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894812	chr10:6016892-6022562	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv549908	chr10:6018225-6021547	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv549909	chr10:6018248-6020101	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6017400-6019200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:6017600-6020800	Active TSS	Colonic Mucosa	Colon
3	chr10:6017800-6019200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr10:6017800-6020200	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr10:6017800-6020400	Active TSS	Brain Anterior Caudate	brain
6	chr10:6017800-6020400	Active TSS	NHDF-Ad	bronchial
7	chr10:6017800-6020800	Active TSS	Lung	lung
8	chr10:6017800-6020800	Active TSS	Rectal Smooth Muscle	rectum
9	chr10:6017800-6021000	Active TSS	Right Atrium	heart
10	chr10:6018000-6019000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:6018000-6019000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:6018000-6019200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:6018000-6020200	Active TSS	Primary monocytes fromperipheralblood	blood
14	chr10:6018000-6020200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr10:6018000-6020200	Active TSS	Stomach Mucosa	stomach
16	chr10:6018000-6020200	Active TSS	Osteobl	bone
17	chr10:6018000-6020400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:6018000-6020400	Active TSS	Brain Cingulate Gyrus	brain
19	chr10:6018000-6020400	Active TSS	Brain Hippocampus Middle	brain
20	chr10:6018000-6020400	Active TSS	Small Intestine	intestine
21	chr10:6018000-6020400	Active TSS	GM12878-XiMat	blood
22	chr10:6018000-6020600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr10:6018000-6020600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:6018000-6020800	Active TSS	Colon Smooth Muscle	Colon
25	chr10:6018200-6019000	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr10:6018200-6019000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr10:6018200-6019200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr10:6018200-6019200	Flanking Bivalent TSS/Enh	Dnd41	blood
29	chr10:6018200-6020000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:6018200-6020200	Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr10:6018200-6020200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:6018200-6020200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr10:6018200-6020200	Active TSS	Muscle Satellite Cultured Cells	--
34	chr10:6018200-6020200	Active TSS	Fetal Intestine Small	intestine
35	chr10:6018200-6020200	Active TSS	Gastric	stomach
36	chr10:6018200-6020400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:6018200-6020400	Active TSS	Ovary	ovary
38	chr10:6018200-6020400	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr10:6018200-6020600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
40	chr10:6018200-6020600	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr10:6018200-6020600	Active TSS	K562	blood
42	chr10:6018200-6020800	Active TSS	Esophagus	oesophagus
43	chr10:6018200-6020800	Active TSS	Left Ventricle	heart
44	chr10:6018200-6020800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr10:6018200-6021000	Active TSS	Psoas Muscle	Psoas
46	chr10:6018200-6021000	Active TSS	Right Ventricle	heart
47	chr10:6018400-6019000	Enhancers	Fetal Heart	heart
48	chr10:6018400-6019000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr10:6018400-6019600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:6018400-6019600	Active TSS	Fetal Intestine Large	intestine

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